View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6988_high_4 (Length: 491)

Name: NF6988_high_4
Description: NF6988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6988_high_4
NF6988_high_4
[»] chr3 (16 HSPs)
chr3 (19-491)||(27085412-27085884)
chr3 (1-393)||(27040957-27041349)
chr3 (237-491)||(27056465-27056719)
chr3 (1-240)||(27062241-27062480)
chr3 (237-491)||(27062507-27062761)
chr3 (237-491)||(27069574-27069828)
chr3 (1-240)||(27069308-27069547)
chr3 (71-240)||(27056268-27056438)
chr3 (277-491)||(27098336-27098550)
chr3 (19-113)||(27079615-27079709)
chr3 (277-491)||(27105335-27105549)
chr3 (252-491)||(27045580-27045819)
chr3 (6-157)||(27045301-27045452)
chr3 (1-88)||(27098033-27098120)
chr3 (436-491)||(27041351-27041406)
chr3 (1-87)||(27105032-27105118)


Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 27085412 - 27085884
Alignment:
19 cagggagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaacacgtatcgatggtggcaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||  |||||| ||||||||||| |||| ||||    
27085412 cagggagtgatgtaaatatcctaactcctccttccattgacagatcatgatcatcaagtttattaggagatgagaaaatacacgtatcgagggtgccaag 27085511  T
119 catcttgcatggtgcaggtacaaaattcactaattcatagacttcaaaatttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttact 218  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27085512 catcttgcatggtgcagttaaaaaattcactaattcatagccttcaaaatttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttact 27085611  T
219 gcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27085612 gcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcat 27085711  T
319 agagtggcatttcgttgagctcacttacttttaaaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatccttcaa 418  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
27085712 agagtggcatttcgttgagcacactcacttttaaaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatcctttaa 27085811  T
419 gttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctctt 491  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
27085812 gttgcgtctactaccaactgcaatggttagcgctgttaaaccattgcttttaagttttaaggctcttgctctt 27085884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 27040957 - 27041349
Alignment:
1 acttaggcatagcagcaacagggagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||  |||||| |||    
27040957 acttaggcatagcagcaacagggagtgatgtaaatatcctaactcctccttccattgatagatcatgatcatcaagtttattaggagatgagaaaataca 27041056  T
101 cgtatcgatggtggcaagcatcttgcatggtgcaggtacaaaattcactaattcatagacttcaaaatttaaattttcctgaaaacccaaatgtttcaac 200  Q
    |||||||| |||| ||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
27041057 cgtatcgagggtgccaagcatcttgcatggtgcagttaaaaaattcactaattcatagccttcaaaatttaaattttcctgaaaacccaaatgtttcaac 27041156  T
201 tcacttagagacgttactgcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27041157 tcacttagagacgttactgcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaa 27041256  T
301 tcagcttaatggtttcatagagtggcatttcgttgagctcacttacttttaaaacaacatttacatctataatagaattcccataataccctt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||    
27041257 tcagcttaatggtttcatagagtggcatttcgttgagctcactcacttttaaaacaacatttacatctatagtagaatttccataataccctt 27041349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 237 - 491
Target Start/End: Original strand, 27056465 - 27056719
Alignment:
237 tccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttga 336  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
27056465 tccaaagagtttattgagtttgtgacataatcagcaatgaaagcaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcgttga 27056564  T
337 gctcacttacttttaaaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaac 436  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||    
27056565 gctcactcacttttaaaacaacatttacatctatagtagaatttccatattaccctttaggtaaagtatcataatcctccaagttgcgtctaataccaac 27056664  T
437 tgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctctt 491  Q
    ||||||||| |||||||||  |||||||||| |||||||||||||||||||||||    
27056665 tgcaatggtcagcactgtttcaccattgctgttaagttttaaggctcttgctctt 27056719  T

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Target: chr3; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27062241 - 27062480
Alignment:
1 acttaggcatagcagcaacagggagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaaca 100  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||  ||  ||||||  ||    
27062241 acttaggcatagcagcaacggggagtgaagtaaatatcctaactcctccatccattgatggatcatgatcatcaagtttattagctgatgagaaaatgca 27062340  T
101 cgtatcgatggtggcaagcatcttgcatggtgcaggtacaaaattcactaattcatagacttcaaaatttaaattttcctgaaaacccaaatgtttcaac 200  Q
     | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  || |||||| |||||||||||||||||||||||||||| ||    
27062341 tgcatcgacggtggcaagcatcttgcatggtgcaggtagaaaattcactaattcataacctccaaaatctaaattttcctgaaaacccaaatgtttccac 27062440  T
201 tcacttagagacgttactgcaccactagcttccaattcca 240  Q
    ||  |||||  |||||||||||||||||||||||||||||    
27062441 tctgttagaaccgttactgcaccactagcttccaattcca 27062480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 237 - 491
Target Start/End: Original strand, 27062507 - 27062761
Alignment:
237 tccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttga 336  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| | ||    
27062507 tccaaagagtttattgagtttcttacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaacgattttatagagtggcatttcatcga 27062606  T
337 gctcacttacttttaaaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaac 436  Q
    | ||||| |||||||||||||| ||| |||||||  ||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||  |||||||    
27062607 gttcactcacttttaaaacaacttttgcatctatggtagaattgccataataccctttaggtaaagtttcataatccatcaagtttcgtctgataccaac 27062706  T
437 tgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctctt 491  Q
    |   |   |||||| ||||    ||||||||||||||||||||||||||||||||    
27062707 taacacatttagcattgttttgtcattgctgctaagttttaaggctcttgctctt 27062761  T

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Target: chr3; HSP #6
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 237 - 491
Target Start/End: Original strand, 27069574 - 27069828
Alignment:
237 tccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttga 336  Q
    |||| |||||| ||||| || |||||||||||||  ||||||| |||||||||||||||||||||||||||||   ||||||||||||||||||| | ||    
27069574 tccacagagttgattgaattagtaacataatcagtggtgaaagaaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcatcga 27069673  T
337 gctcacttacttttaaaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaac 436  Q
    ||||||| |||||||||||||| ||| |||| ||  |||||||||| ||||||||||| |||||||||||| ||||| ||||||| |||||  |||||||    
27069674 gctcactcacttttaaaacaacttttgcatccatggtagaattcccgtaataccctttcggtaaagtatcaaaatccatcaagttacgtctcataccaac 27069773  T
437 tgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctctt 491  Q
    |   ||  | |||| ||||  | ||||||||||||| ||||||||||||||||||    
27069774 taacatattcagcattgttttatcattgctgctaagctttaaggctcttgctctt 27069828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27069308 - 27069547
Alignment:
1 acttaggcatagcagcaacagggagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaaca 100  Q
    |||||||||| ||| |||||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||  ||||||  ||    
27069308 acttaggcatggcatcaacagggagtgatgtgaaaatcctaactcctccatccattgatggatcatgatcatcaagtttattaggagacgagaaaatgca 27069407  T
101 cgtatcgatggtggcaagcatcttgcatggtgcaggtacaaaattcactaattcatagacttcaaaatttaaattttcctgaaaacccaaatgtttcaac 200  Q
    || ||| | ||| |||||||||||||| ||||| ||||| |||||||| | ||||||| || |||||| || |||||| |||||||||||||| ||| ||    
27069408 cgcatcaacggtagcaagcatcttgcacggtgctggtactaaattcacaacttcatagcctccaaaatctatattttcatgaaaacccaaatgcttccac 27069507  T
201 tcacttagagacgttactgcaccactagcttccaattcca 240  Q
    ||  | | |   |||||||||||||| |||||||||||||    
27069508 tctgtcaaaactgttactgcaccacttgcttccaattcca 27069547  T

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Target: chr3; HSP #8
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 27056268 - 27056438
Alignment:
71 atcaagtttattaggagaaaagaaaaaacacgtatcgatggtggcaagcatcttgcatggtgca--ggtacaaaattcactaattcatagacttcaaaat 168  Q
    ||||||||||||||||||  |||||| ||||||||||| ||||||||||||| |||||||| ||  |||| ||||||||||||||||||| |||||||||    
27056268 atcaagtttattaggagatgagaaaatacacgtatcgagggtggcaagcatcatgcatggtacacaggtaaaaaattcactaattcatagccttcaaaat 27056367  T
169 ttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttactgcaccactagcttccaattcca 240  Q
    ||||||||||||||||| ||||||||||||| |||| ||||  |||||||||||||||| ||||||||||||    
27056368 ttaaattttcctgaaaatccaaatgtttcaattcac-tagaaccgttactgcaccactatcttccaattcca 27056438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 277 - 491
Target Start/End: Original strand, 27098336 - 27098550
Alignment:
277 aagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcacttacttttaaaacaacatttacatctataataga 376  Q
    ||||||| |||||||||||| | || ||||||||  |||||||||||||| |||| | ||||||||| |||||||| |||   ||| |||| | |   ||    
27098336 aagcaatgtttttagtctctctgatgagcttaataatttcatagagtggcctttcatcgagctcactaacttttaacacagtgtttgcatcaacacatga 27098435  T
377 attcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagtttt 476  Q
    |||||||||||| || |||||||||| |||| |||||||||||||||||||| ||||  || ||||||| || ||||||  |||||||||| ||||||||    
27098436 attcccataataaccattaggtaaaggatcaaaatccttcaagttgcgtctaatacctgctacaatggtcagtactgtttcaccattgctgttaagtttt 27098535  T
477 aaggctcttgctctt 491  Q
    |||||||||||||||    
27098536 aaggctcttgctctt 27098550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 27079615 - 27079709
Alignment:
19 cagggagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaacacgtatcgatggtg 113  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||  |||||| ||||||||||| ||||    
27079615 cagggagtgatgtaaatatcctaactcctccttccattgacagatcatgatcatcaagtttattaggagatgagaaaatacacgtatcgagggtg 27079709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 277 - 491
Target Start/End: Original strand, 27105335 - 27105549
Alignment:
277 aagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcacttacttttaaaacaacatttacatctataataga 376  Q
    ||||||| |||||||||||| | || || |||||  |||||||||||||| |||| | |||||| || |||||||| |||   ||| |||| | |   ||    
27105335 aagcaatgtttttagtctctcttattaggttaataatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatga 27105434  T
377 attcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagtttt 476  Q
    |||||||||||| || ||||||||||  ||| |||||||||| ||||||||| ||||| || ||||||| | |||||||  ||||||| || ||||||||    
27105435 attcccataataaccattaggtaaaggttcaaaatccttcaacttgcgtctaataccagctacaatggtcaacactgtttcaccattgttgttaagtttt 27105534  T
477 aaggctcttgctctt 491  Q
    |||||||||||||||    
27105535 aaggctcttgctctt 27105549  T

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Target: chr3; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 252 - 491
Target Start/End: Original strand, 27045580 - 27045819
Alignment:
252 gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcacttactttta 351  Q
    |||||| | ||||||||||  | | ||||||| ||||||| |||||| |||| |||||   ||||||||||||||||||| ||||||||||| |||||||    
27045580 gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta 27045679  T
352 aaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcac 451  Q
    | ||||| ||| |||| | | ||| ||| |||||||||||| |||| |||| ||||||| | |||| | |||||||| ||||||||   ||  | | ||     
27045680 acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacat 27045779  T
452 tgttaaaccattgctgctaagttttaaggctcttgctctt 491  Q
    ||||   |||||| ||||||||| ||||||||||||||||    
27045780 tgtttttccattgttgctaagttgtaaggctcttgctctt 27045819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 27045301 - 27045452
Alignment:
6 ggcatagcagcaacagggagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaacacgtat 105  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||  ||||||   |||||  |||   |    
27045301 ggcatggcagcaacagggagtgatgtaaaaatcttaactcctcctttcattgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcaccctt 27045400  T
106 cgatggtggcaagcatcttgcatggtgcaggtacaaaattcactaattcata 157  Q
    | |  |  |||| ||| ||||||||||| ||||||||||||||| |||||||    
27045401 ccaaagacgcaaacatgttgcatggtgctggtacaaaattcactgattcata 27045452  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27098033 - 27098120
Alignment:
1 acttaggcatagcagcaacagggagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggaga 88  Q
    |||| ||||| ||||||||||||||||  ||||| ||| |||| ||||||| |||||||||||||||||  |||| ||||||||||||    
27098033 acttgggcatggcagcaacagggagtgtagtaaaaatcttaacccctcctttcattgatggatcatcattgtcaaatttattaggaga 27098120  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 491
Target Start/End: Original strand, 27041351 - 27041406
Alignment:
436 ctgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctctt 491  Q
    |||||||||| | |||||||  |||||||||| |||||||||||||||||||||||    
27041351 ctgcaatggtcaacactgtttcaccattgctgttaagttttaaggctcttgctctt 27041406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 27105032 - 27105118
Alignment:
1 acttaggcatagcagcaacagggagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggag 87  Q
    |||| ||||| ||||||||||||||||  ||||| ||| |||  ||||||| ||| |||||||||||||  |||| |||||||||||    
27105032 acttgggcatggcagcaacagggagtgtagtaaaaatcttaatccctcctttcatagatggatcatcattgtcaaatttattaggag 27105118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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