View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6988_high_7 (Length: 332)
Name: NF6988_high_7
Description: NF6988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6988_high_7 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 27086434 - 27086108
Alignment:
| Q |
6 |
tcgagtttggtgttggtgatgcagaatatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27086434 |
tcgagtttggtgttggtgatgcagaatatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacac |
27086335 |
T |
|
| Q |
106 |
agatattgcaaaagacttggtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcaca |
205 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27086334 |
agaaattgcaaaagacttggtgcttgatattccttctcctaaggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcaca |
27086235 |
T |
|
| Q |
206 |
attggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
27086234 |
attggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttgcaagaggaagaactgagccatcag |
27086135 |
T |
|
| Q |
306 |
tgaaacctgtgtgggaaagagaaaaac |
332 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27086134 |
tgaaacctgtgtgggaaagagaaaaac |
27086108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 27041956 - 27041630
Alignment:
| Q |
6 |
tcgagtttggtgttggtgatgcagaatatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacac |
105 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27041956 |
tcgagtttggtctaggtggtgcagaatatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacac |
27041857 |
T |
|
| Q |
106 |
agatattgcaaaagacttggtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcaca |
205 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27041856 |
agaaattgcaaaagacttggtgcttgatattccttctcctaaggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcaca |
27041757 |
T |
|
| Q |
206 |
attggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27041756 |
attggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcag |
27041657 |
T |
|
| Q |
306 |
tgaaacctgtgtgggaaagagaaaaac |
332 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27041656 |
tgaaacctgtgtgggaaagagaaaaac |
27041630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 28 - 330
Target Start/End: Complemental strand, 27063283 - 27062981
Alignment:
| Q |
28 |
agaatatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtg |
127 |
Q |
| |
|
||||| ||| ||||| ||||| |||||| |||||| ||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||| | |||||| |
|
|
| T |
27063283 |
agaatttggcgttccgttcttggaagcaactgctaactgcacactttcttctcttcattacctggacaatactaacacagaaattgcaaaacatttggtg |
27063184 |
T |
|
| Q |
128 |
cttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatg |
227 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
27063183 |
cttgatcttccttctcctcaagataaaaattaccctttggtgttaatggtgacgaaatttctttgtggtggtttcacaattggaatggggatgtcacatg |
27063084 |
T |
|
| Q |
228 |
ctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcagtgaaacctgtgtgggaaagaga |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27063083 |
ctatttgtgacggatttggcgcatcacaattcttcaaagcaattcttgaacttgcaagaggaagaaccgagccatcagtgaaacctgtgtgggaaagaga |
27062984 |
T |
|
| Q |
328 |
aaa |
330 |
Q |
| |
|
||| |
|
|
| T |
27062983 |
aaa |
27062981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 327
Target Start/End: Complemental strand, 27046375 - 27046054
Alignment:
| Q |
6 |
tcgagtttggtgttggtgatgcagaatatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacac |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046375 |
tcgagtttggtgttggtggtgcagaatatggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacac |
27046276 |
T |
|
| Q |
106 |
agatattgcaaaagacttggtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcaca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| || ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
27046275 |
agatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattaccctttggtattcatggtgacaaaatttatttgtggtggtttcaca |
27046176 |
T |
|
| Q |
206 |
attggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcag |
305 |
Q |
| |
|
||||||||||||| || |||| | ||||||| |||| ||| || ||| |||||| ||||||| ||||||||| || ||||||| |||||| || | |
|
|
| T |
27046175 |
attggaatggggtgttcacatgttgtttgtgatggatatggttcaattcaagtcttcaaagcaattattgaacttgtaaaaggaagaagtgagccttctg |
27046076 |
T |
|
| Q |
306 |
tgaaacctgtgtgggaaagaga |
327 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
27046075 |
tgatacctgtgtgggaaagaga |
27046054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 25 - 329
Target Start/End: Complemental strand, 27070359 - 27070055
Alignment:
| Q |
25 |
tgcagaatatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttg |
124 |
Q |
| |
|
|||||||| ||| ||||| ||||| |||||| |||||| ||||| |||||||| ||||||||| ||||||||||| |||| || ||||||||| | ||| |
|
|
| T |
27070359 |
tgcagaatttggcgttccgttcttggaagcaactgctaactgcacactttcttcccttcattacctggacaatactaacactgaaattgcaaaacatttg |
27070260 |
T |
|
| Q |
125 |
gtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgc |
224 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| | |
|
|
| T |
27070259 |
gtgcttgattttcctactcctcaggataaaaattaccctttggtgttaatggtgacaaaatttctctgtggtggtttcacaattggaatggggatgtcac |
27070160 |
T |
|
| Q |
225 |
atgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcagtgaaacctgtgtgggaaag |
324 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| |||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27070159 |
atgctatttgtgacggatttggtgcatcacaattcttcaaagcagttgttgaacttgcaagaggaagaactgagccatctgtgaaacctgtgtgggaaag |
27070060 |
T |
|
| Q |
325 |
agaaa |
329 |
Q |
| |
|
||||| |
|
|
| T |
27070059 |
agaaa |
27070055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 32 - 327
Target Start/End: Complemental strand, 27099065 - 27098779
Alignment:
| Q |
32 |
tatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttg |
131 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||||||||||| || |||||||||||||||| |||||||| ||||||||| | |||||||||| |
|
|
| T |
27099065 |
tatggtgttccattcttggaagcaattgctaactgcaccctttcttctattaattacttggacaataccgacacagaaattgcaaaacatttggtgcttg |
27098966 |
T |
|
| Q |
132 |
atattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctat |
231 |
Q |
| |
|
|| || || ||| ||||||||||||||| | ||||||||||||||||||||| |||||||| || ||||||||| ||| ||| ||||| |
|
|
| T |
27098965 |
at---------cccgaagagaaagcttaccctttggtgttcaaggtgacaaaatttctttgtggaggtttcacgatcggaatgggggtgttgcacgctat |
27098875 |
T |
|
| Q |
232 |
ttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcagtgaaacctgtgtgggaaagaga |
327 |
Q |
| |
|
||||||||| |||| ||||| ||| |||||| ||| || ||||||||| ||| ||||||| |||||| || || |||||||||||||||||| |
|
|
| T |
27098874 |
ctgtgacggagttggtgcatctcaattcttcaaagcgatcattgaacttgcaaggggaagaaatgagccctcgaagatacctgtgtgggaaagaga |
27098779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 327
Target Start/End: Complemental strand, 27106064 - 27105778
Alignment:
| Q |
32 |
tatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttg |
131 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||||||||||| || |||||||||||||||| |||||||| ||||||||| | |||||||| |
|
|
| T |
27106064 |
tatggtgttccattcttggaagcaagtgctaactgcaccctttcttctattaattacttggacaataccgacacagaaattgcaaaacaactggtgctta |
27105965 |
T |
|
| Q |
132 |
atattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctat |
231 |
Q |
| |
|
|| ||| || |||| ||||||||||||||| | |||||||||||||| |||||| ||||||||||| ||||||||| || ||| ||||| |
|
|
| T |
27105964 |
at---------cctgaagacaaaacttaccctttggtgttcaaggtgacaaaatttcgttgtggaggtttcacaatcggaatgggggtgctgcacgctat |
27105874 |
T |
|
| Q |
232 |
ttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcagtgaaacctgtgtgggaaagaga |
327 |
Q |
| |
|
||||||||| |||| ||||| ||| | |||| ||| ||| ||||||||| ||| ||||||| |||||| || || |||||||||||||||||| |
|
|
| T |
27105873 |
ctgtgacggagttggtgcatctcaattattcaaagcgattattgaacttgcaagaggaagaaatgagccctcgacgatacctgtgtgggaaagaga |
27105778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 327
Target Start/End: Complemental strand, 19415090 - 19414787
Alignment:
| Q |
24 |
atgcagaatatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagactt |
123 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||| |||||| |||| |||| ||||||| |||||||||||||| | |||||||| | |||||| | || |
|
|
| T |
19415090 |
atgcagaatttggagttccattcttggaagcaactgctaactgcagccttgattctcttaattacttggacaatgcagacacagaagtggcaaaacaatt |
19414991 |
T |
|
| Q |
124 |
ggtgcttgatattccttctcctatggataaaagttaccctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcg |
223 |
Q |
| |
|
|||| ||||| |||||| ||| ||||| ||||||| |||||| ||||||| ||| ||||| ||||||| || | || ||||||||||||||||| |
|
|
| T |
19414990 |
ggtgtttgatcctccttcccctcaagataagtgttacccattggtggtaatggtaacacaatttatttgtggtggcataaccattggaatggggttgtca |
19414891 |
T |
|
| Q |
224 |
catgctatttgtgacggatttggcgcatcacaaatcttcagagcaattgttgaacttggaagtggaagaactgagccatcagtgaaacctgtgtgggaaa |
323 |
Q |
| |
|
||||| ||||||| |||||||| ||||| ||| | |||| |||||||||||| ||| || ||||||| |||||| | || |||||| | ||||||| |
|
|
| T |
19414890 |
catgccgtttgtgatggatttggtgcatctcaatttttcaatgcaattgttgaaattgcaaaaggaagaaatgagcctacggttaaacctatatgggaaa |
19414791 |
T |
|
| Q |
324 |
gaga |
327 |
Q |
| |
|
|||| |
|
|
| T |
19414790 |
gaga |
19414787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 327
Target Start/End: Complemental strand, 20065076 - 20064910
Alignment:
| Q |
161 |
cctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatct |
260 |
Q |
| |
|
|||||||| || | ||||||||| ||||||||||| |||||||||||||||||||| ||||| ||| | ||||||| || | ||| ||||| ||| ||| |
|
|
| T |
20065076 |
cctttggttttcaaggtgacaaagtttctttgtggtggtttcacaattggaatgggattgtcacatagtgtttgtgatggttatggtgcatctcaattct |
20064977 |
T |
|
| Q |
261 |
tcagagcaattgttgaacttggaagtggaagaactgagccatcagtgaaacctgtgtgggaaagaga |
327 |
Q |
| |
|
|||||| ||| |||||||| |||||| | || ||| ||||| |||||||||| ||||| ||||| |
|
|
| T |
20064976 |
atagagcacttgctgaacttgcaagtggtaaaaatgaaccatccttgaaacctgtttgggagagaga |
20064910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University