View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6988_high_8 (Length: 326)

Name: NF6988_high_8
Description: NF6988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6988_high_8
NF6988_high_8
[»] chr8 (1 HSPs)
chr8 (1-309)||(16908686-16908994)
[»] chr1 (1 HSPs)
chr1 (1-309)||(14869671-14869973)
[»] chr7 (6 HSPs)
chr7 (48-187)||(14710257-14710396)
chr7 (136-304)||(26204405-26204570)
chr7 (132-194)||(26260388-26260450)
chr7 (136-190)||(26224043-26224097)
chr7 (233-294)||(14710156-14710217)
chr7 (132-194)||(26227488-26227550)
[»] chr5 (3 HSPs)
chr5 (68-187)||(17572660-17572779)
chr5 (68-294)||(17619933-17620159)
chr5 (73-306)||(5994936-5995166)
[»] chr6 (2 HSPs)
chr6 (51-158)||(12613434-12613541)
chr6 (233-294)||(12613610-12613671)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 16908994 - 16908686
Alignment:
Q  1 taaagctggtagaggacatggtaaagaataagatgaagaagaaggggtgcttaagtggcttgattcaaagaaagatgattctgttctctatgttagtttt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  16908994 taaagctggtagaggacatggtaaagaagaagatgaagaagaaggggtgcttaagtggcttgattcaaagaaatatgattctgttctttatgttagtttt 16908895  T
Q  101 gggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaatcgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16908894 gggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttaggaaaatcgaag 16908795  T
Q  201 atgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccacagcttct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16908794 atgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaagaaagaaacaaaggctatttgatatggggttgggcaccacagcttct 16908695  T
Q  301 gatactaga 309  Q
    |||||||||    
T  16908694 gatactaga 16908686  T

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Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 14869671 - 14869973
Alignment:
Q  1 taaagctggtagaggacatggtaaagaataagatgaagaagaaggggtgcttaagtggcttgattcaaagaaagatgattctgttctctatgttagtttt 100  Q
    |||||| |||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14869671 taaagcgggtagagggcatggtaaagaagaagatgaagatgaaggagtgcttaagtggcttgattctaagaaagatgattctgttctctatgttagtttt 14869770  T
Q  101 gggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaatcgaag 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  14869771 gggagcatgaacaagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttaggaaaattgaag 14869870  T
Q  201 atgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccacagcttct 300  Q
    |||  ||||| |||||      |||||| |  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||    
T  14869871 atgttgaagatggtga------tttttttacggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacaactgct 14869964  T
Q  301 gatactaga 309  Q
    |||||||||    
T  14869965 gatactaga 14869973  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 14710396 - 14710257
Alignment:
Q  48 tgcttaagtggcttgattcaaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctca 147  Q
    ||||||| |||||| | || ||||||||  |||||||||||||| | |||||||| ||| | ||||||||||| ||  |||||||  |||||||||||||    
T  14710396 tgcttaaatggcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctca 14710297  T
Q  148 tgcacttgaagattctggccatgatttcatttgggttgtt 187  Q
    ||||||||||| |||  |||||||||||||||||||||||    
T  14710296 tgcacttgaagcttcaagccatgatttcatttgggttgtt 14710257  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 304
Target Start/End: Original strand, 26204405 - 26204570
Alignment:
Q  136 tgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaatcgaagatgccgaagacggtgatgatggttttttgagtgag 235  Q
    ||||||||||||||  |||||| ||||||| ||| |||||||||||||||||||| |||   | |||   || || ||||| || |||||| |||  ||     
T  26204405 tgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttagagaaa---aggataaagatgatggtgaagaaggttttctgatagat 26204501  T
Q  236 tttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccacagcttctgata 304  Q
    |||||||| || ||||| ||||| || || |||||| | ||||||  |||||| |||||||||||||||    
T  26204502 tttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctgata 26204570  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 26260388 - 26260450
Alignment:
Q  132 ttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaa 194  Q
    |||||||||||||||||| ||||||| |||| || ||| ||||||||||||||||||| ||||    
T  26260388 ttgttgaaatagctcatggacttgaaaattcaggtcataatttcatttgggttgttaggaaaa 26260450  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 26224043 - 26224097
Alignment:
Q  136 tgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttaga 190  Q
    ||||||||||||||  |||||| ||||||| ||| ||||||||||||||||||||    
T  26224043 tgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttaga 26224097  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 14710217 - 14710156
Alignment:
Q  233 gagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccaca 294  Q
    |||||||| |||||| |||| ||||| || || || ||||||||||||||||||||||||||    
T  14710217 gagtttgaaaagagagtgaaagaaagcaataagggttatttgatatggggttgggcaccaca 14710156  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 26227488 - 26227550
Alignment:
Q  132 ttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaa 194  Q
    |||| |||||||||||||  |||||| |||| || ||| ||||||||||||||||||| ||||    
T  26227488 ttgtagaaatagctcatggtcttgaaaattcaggtcataatttcatttgggttgttaggaaaa 26227550  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 17572779 - 17572660
Alignment:
Q  68 aagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggcc 167  Q
    ||||||||  |||||||||||||||| |||||||| ||| | ||||||||||| ||  |||||||  |||||||||||||||||||||||  |||  |||    
T  17572779 aagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctcatgcacttgaaacttcaagcc 17572680  T
Q  168 atgatttcatttgggttgtt 187  Q
    ||||||||||||||||||||    
T  17572679 atgatttcatttgggttgtt 17572660  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 294
Target Start/End: Original strand, 17619933 - 17620159
Alignment:
Q  68 aagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggcc 167  Q
    ||||||||  |||||||| ||||||| |||||||| ||| | |||||||||||  |  |||||||  |||||||||||||||||||||||| |||  |||    
T  17619933 aagaaagagaattctgttatctatgtaagttttggcagcttaaacaagttcccaccatctcaactcattgaaatagctcatgcacttgaagcttcaagcc 17620032  T
Q  168 atgatttcatttgggttgttag-aaaaatcgaagatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaag 266  Q
    || ||||||||||||||||| | || |||   | |||   |||| |||||||| |||||| ||   ||||||||||| |||||||| ||||  ||||| |    
T  17620033 ataatttcatttgggttgttcgtaagaatatta-atgaaaaagaaggtgatgaaggttttatggaggagtttgagaaaagaatgaaagaaaacaacaagg 17620131  T
Q  267 gctatttgatatggggttgggcaccaca 294  Q
    | |||||||||||||||||||| |||||    
T  17620132 gttatttgatatggggttgggccccaca 17620159  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 306
Target Start/End: Complemental strand, 5995166 - 5994936
Alignment:
Q  73 agatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgat 172  Q
    ||||| ||||||| | ||||| |||||||| || ||||| || || |||  | ||||  | |||||||| || |||||||||||| |||| || ||| ||    
T  5995166 agatggttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaaaattcaggtcataat 5995067  T
Q  173 ttcatttgggttgttagaaaaatcgaagatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaaggctatt 272  Q
    ||||||||||||||||||||||  |||||    ||||| |||| || |  ||| ||||  ||||||||||||| |||||| |||||    ||||||||||    
T  5995066 ttcatttgggttgttagaaaaaatgaagaaaatgaagaaggtggtgtt--tttcttgaa-gagtttgagaagaaaatgaaagaaagtggaaaaggctatt 5994970  T
Q  273 tgatatggggttgggcaccacagcttctgatact 306  Q
    |||| ||||| ||||||||||||||| |||||||    
T  5994969 tgatttggggatgggcaccacagcttttgatact 5994936  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 12613434 - 12613541
Alignment:
Q  51 ttaagtggcttgattcaaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgc 150  Q
    |||| |||||| |||| ||||||||  |||||||||||||||| |||||||| |||||||||||||||||  |  |||||||  ||||||||||||||||    
T  12613434 ttaaatggcttaattccaagaaagagaattctgttctctatgtaagttttggtagcatgaacaagttcccatcatctcaactcattgaaatagctcatgc 12613533  T
Q  151 acttgaag 158  Q
    ||||||||    
T  12613534 acttgaag 12613541  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 12613610 - 12613671
Alignment:
Q  233 gagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccaca 294  Q
    ||||||||||| ||| |||| ||||| || || || ||||||||||||||||||||||||||    
T  12613610 gagtttgagaaaagagtgaaagaaagcaataagggttatttgatatggggttgggcaccaca 12613671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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