View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6988_low_1 (Length: 595)
Name: NF6988_low_1
Description: NF6988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6988_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 38 - 579
Target Start/End: Complemental strand, 38298756 - 38298214
Alignment:
| Q |
38 |
agccccccaacaacttgagatagagtgttttatgaatttaccatcggaaaccacaaaaatgcatgataacaatcaacagaaagttccagaatattcttct |
137 |
Q |
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| T |
38298756 |
agcccccctacaacttgagatagagtgttttatgaattcaccatcggaaaccacaaaaatgcatgataacaaccaacaaaatgttccagaatattcttcc |
38298657 |
T |
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| Q |
138 |
aaacaaacttctagaaatattcaaacggtctgtaaaaaagtatcctcaacattctttgggaaatacatgagacatatcacagacaaaaatattcttctaa |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38298656 |
aaacaaacttctagaaatattcaaacggtctgtaaaaaagtatcctcaacattctttgggaaatacatgagacatatcacagacaaaa-tattcttctaa |
38298558 |
T |
|
| Q |
238 |
tgaccatataaagcatcacaaaatggggtctcagtttnnnnnnncaaatctaaata-agtctaatagctctaataaataatgcataaatgattcccttaa |
336 |
Q |
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| T |
38298557 |
tgaccatataaagcatcacaaaatggggtctcagttaaaaaaaacaaatataaatacagtctaatagctctaataaataatgcataaatgattctcttaa |
38298458 |
T |
|
| Q |
337 |
aagatatagaggaactcaaaccgagaggattatt-taacaaaatacctttggatttgattcattctttataacctgagcttgaaaaagatccaagggatc |
435 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38298457 |
aagatatagaggaactcaaaccgagaggattattataacaaaatacctttggatttgattcattctttataacctgagcttgaaaaagatccaagggatc |
38298358 |
T |
|
| Q |
436 |
tgtggccgcccaatcttgatatttaccaggaaaatctacactagatcatcaacaaaagaaagnnnnnnntgcagtgaatactcaaaccaatcagcaatga |
535 |
Q |
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| T |
38298357 |
tgtggccgcccaatcttgatatttaccaggaaaatctacactagatcatcaacaaaagaaagaaaaaaatgcagtgaatactcaaaccaatcagcaatgg |
38298258 |
T |
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| Q |
536 |
acatgctagtatcaaaagagattttgttttacaaaaatgtaagt |
579 |
Q |
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| T |
38298257 |
acatgctagtatcaaaagagattttgtattacaaaaatgtaagt |
38298214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 38298947 - 38298769
Alignment:
| Q |
11 |
acatcattaagttatgcagttagcataagccccccaacaacttgagatagagtgttttatgaatttaccatcggaaaccacaaaaatgcatgataacaat |
110 |
Q |
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| T |
38298947 |
acatcattaagttatgcagttagcataagccccccaacaacttgagatagagtgttttatgaatttaccatcggaaaccacaaaaatgcatgataacaat |
38298848 |
T |
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| Q |
111 |
caacagaaagttccagaatattcttctaaacaaacttctagaaatattcaaacggtctgtaaa-aaagtatcctcaaca |
188 |
Q |
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| T |
38298847 |
caacaaaaagttccagaatattcttctacacaaacttctagaaatattcaaacggtccgtaaagaaagtatcctaaaca |
38298769 |
T |
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