View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6988_low_11 (Length: 240)
Name: NF6988_low_11
Description: NF6988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6988_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 16909236 - 16909015
Alignment:
| Q |
19 |
cctgggttgcctcacaacgtggaaatgacgcgtttgcaacttccggattggcttagagcaccaaatggttatacttatttgatgaagatgatcaaagatt |
118 |
Q |
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| T |
16909236 |
cctgggttgcctcacaacgtggaaatgacgcgtttgcaacttccggattggcttagagcaccaaatggttatacttatttgatgaagatgatcaaagatt |
16909137 |
T |
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| Q |
119 |
cagagnnnnnnngctatggatcattgtttgatagctattatgagattgaaggtacttatgaggactattacaagatagccatgggaagtaagagttggag |
218 |
Q |
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| T |
16909136 |
cagagaaaaaaagctatggatcattgtttgatagctattatgagattgaaggtacttatgaggactattacaagatagccatgggaagtaagagttggag |
16909037 |
T |
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| Q |
219 |
tgtgggaccagtttctttgtgg |
240 |
Q |
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| T |
16909036 |
tgtgggaccagtttctttgtgg |
16909015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 14869432 - 14869644
Alignment:
| Q |
19 |
cctgggttgcctcacaacgtggaaatgacgcgtttgcaacttccggattggcttagagcaccaaatggttatacttatttgatgaagatgatcaaagatt |
118 |
Q |
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| T |
14869432 |
cctgggttgcctcacaaggtggaaatgaaacgtttacaacttccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagatt |
14869531 |
T |
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| Q |
119 |
cagagnnnnnnngctatggatcattgtttgatagctattatgagattgaaggtacttatgaggactattacaagatagccatgggaagtaagagttggag |
218 |
Q |
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| T |
14869532 |
cagagagaaaaagctatggatcactgtttgatag---tcatgagattgagagtacatatgaggagcattacaagacagcaatgggaaccaagagttggag |
14869628 |
T |
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| Q |
219 |
tgtgggaccagtttct |
234 |
Q |
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| T |
14869629 |
cctgggaccagtttct |
14869644 |
T |
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