View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6989_high_4 (Length: 252)
Name: NF6989_high_4
Description: NF6989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6989_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 10823915 - 10824132
Alignment:
| Q |
19 |
agatgtaccttgataaaaattaaattaaaattgtagatgctaggcacacatcccatgtaaaagccagtaaaatttatgtggtttataaacttttatcatc |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10823915 |
agatgtaccttgataaaaat-----taaaattgtagatgctaggcacacatcccatgtaaaagccagtaaaatttatgtggtttataaacttttatcatc |
10824009 |
T |
|
| Q |
119 |
ctattgagattgattggatgtttgggtgattttaaaatatattttgatcttaattcagtcacttgttagttattgattctatggagatatttgttcctcg |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10824010 |
ctattgagattgattggatttttgggtgattttaaaatatattttgatcttaattcagtcacttgttagttattgattctatggagatatttgttcctcg |
10824109 |
T |
|
| Q |
219 |
gttgattcctttgtagttttctt |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10824110 |
gttgattcctttgtagttttctt |
10824132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University