View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6989_low_1 (Length: 410)

Name: NF6989_low_1
Description: NF6989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6989_low_1
NF6989_low_1
[»] chr7 (52 HSPs)
chr7 (227-404)||(43444388-43444565)
chr7 (30-168)||(45237292-45237429)
chr7 (133-194)||(39458559-39458620)
chr7 (246-333)||(17889518-17889605)
chr7 (215-333)||(17888532-17888650)
chr7 (251-320)||(17890406-17890475)
chr7 (135-173)||(44941430-44941468)
chr7 (224-286)||(48626817-48626878)
chr7 (136-169)||(5833052-5833085)
chr7 (136-169)||(26816682-26816715)
chr7 (137-173)||(29461840-29461876)
chr7 (216-272)||(43443501-43443557)
chr7 (135-173)||(2916108-2916146)
chr7 (135-169)||(16537553-16537587)
chr7 (135-169)||(16628075-16628109)
chr7 (135-173)||(19599151-19599189)
chr7 (135-173)||(21322181-21322219)
chr7 (135-173)||(21554951-21554989)
chr7 (135-173)||(22991408-22991446)
chr7 (135-173)||(23413063-23413101)
chr7 (135-173)||(25923397-25923435)
chr7 (135-173)||(27263347-27263385)
chr7 (135-173)||(27270241-27270279)
chr7 (135-173)||(37230045-37230083)
chr7 (139-173)||(40187657-40187691)
chr7 (135-173)||(44454518-44454556)
chr7 (132-173)||(1285083-1285124)
chr7 (137-174)||(4346666-4346703)
chr7 (132-169)||(9819563-9819600)
chr7 (135-168)||(10467133-10467166)
chr7 (132-169)||(10721488-10721525)
chr7 (132-173)||(18223737-18223778)
chr7 (132-169)||(18505671-18505708)
chr7 (140-173)||(21164780-21164813)
chr7 (135-168)||(34773242-34773275)
chr7 (132-169)||(39801716-39801753)
chr7 (135-188)||(47342451-47342504)
chr7 (136-173)||(48837873-48837910)
chr7 (137-173)||(3766820-3766856)
chr7 (134-174)||(4340132-4340172)
chr7 (137-173)||(9712223-9712259)
chr7 (133-169)||(14046626-14046662)
chr7 (133-169)||(14356656-14356692)
chr7 (137-173)||(15106716-15106752)
chr7 (133-173)||(21751641-21751681)
chr7 (133-173)||(22267587-22267627)
chr7 (133-169)||(24991791-24991827)
chr7 (137-173)||(28800046-28800082)
chr7 (137-173)||(29625930-29625966)
chr7 (137-173)||(38889518-38889554)
chr7 (215-259)||(45223769-45223813)
chr7 (137-173)||(48288426-48288462)
[»] chr4 (50 HSPs)
chr4 (215-335)||(46514885-46515005)
chr4 (215-336)||(46514196-46514317)
chr4 (215-311)||(16897598-16897694)
chr4 (270-333)||(53523703-53523766)
chr4 (330-404)||(2905427-2905500)
chr4 (215-333)||(44817729-44817847)
chr4 (226-333)||(33352899-33353006)
chr4 (135-173)||(20096287-20096325)
chr4 (135-173)||(21318270-21318308)
chr4 (135-185)||(41520948-41520998)
chr4 (135-169)||(50442764-50442798)
chr4 (135-173)||(55430602-55430640)
chr4 (132-169)||(8027411-8027448)
chr4 (132-169)||(8494997-8495034)
chr4 (132-173)||(14197445-14197486)
chr4 (135-169)||(2649750-2649784)
chr4 (135-169)||(4360661-4360695)
chr4 (135-173)||(13276135-13276173)
chr4 (135-173)||(17423194-17423232)
chr4 (135-173)||(19908698-19908736)
chr4 (135-169)||(20799411-20799445)
chr4 (135-173)||(25783157-25783195)
chr4 (135-173)||(29908062-29908100)
chr4 (139-169)||(32006510-32006540)
chr4 (135-173)||(38374963-38375001)
chr4 (135-169)||(38416067-38416101)
chr4 (135-173)||(43034359-43034397)
chr4 (135-169)||(50362156-50362190)
chr4 (135-169)||(53190305-53190339)
chr4 (135-173)||(56204953-56204991)
chr4 (132-169)||(19854575-19854612)
chr4 (135-168)||(21623436-21623469)
chr4 (132-169)||(33900738-33900775)
chr4 (132-169)||(38812863-38812900)
chr4 (137-174)||(41897572-41897609)
chr4 (132-169)||(43155089-43155126)
chr4 (136-173)||(54151643-54151680)
chr4 (137-173)||(3036080-3036116)
chr4 (137-173)||(12167641-12167677)
chr4 (133-173)||(13304117-13304157)
chr4 (137-173)||(13578490-13578526)
chr4 (133-173)||(23225871-23225911)
chr4 (135-167)||(23775530-23775562)
chr4 (133-173)||(24063223-24063263)
chr4 (132-164)||(25134703-25134735)
chr4 (135-163)||(33758821-33758849)
chr4 (133-173)||(45970722-45970762)
chr4 (135-171)||(48067141-48067177)
chr4 (137-173)||(52798287-52798323)
chr4 (137-173)||(56479251-56479287)
[»] chr1 (50 HSPs)
chr1 (223-366)||(13259614-13259756)
chr1 (226-333)||(26778866-26778973)
chr1 (226-336)||(29117386-29117496)
chr1 (226-335)||(29116709-29116818)
chr1 (227-333)||(13258964-13259071)
chr1 (227-333)||(27773239-27773345)
chr1 (226-333)||(1170039-1170147)
chr1 (135-173)||(19396208-19396246)
chr1 (251-333)||(28677229-28677311)
chr1 (132-173)||(12852216-12852257)
chr1 (132-173)||(24631845-24631886)
chr1 (137-173)||(41972749-41972785)
chr1 (127-173)||(1854275-1854321)
chr1 (135-173)||(2889943-2889981)
chr1 (135-173)||(47719124-47719162)
chr1 (136-173)||(12212301-12212338)
chr1 (132-173)||(29042543-29042584)
chr1 (133-173)||(30248060-30248100)
chr1 (134-173)||(40618916-40618955)
chr1 (132-163)||(46579663-46579694)
chr1 (135-169)||(9872122-9872156)
chr1 (135-169)||(21400040-21400074)
chr1 (135-173)||(28039877-28039915)
chr1 (135-173)||(29800539-29800577)
chr1 (139-173)||(30678834-30678868)
chr1 (135-173)||(32497498-32497536)
chr1 (139-173)||(33153901-33153935)
chr1 (139-173)||(41573290-41573324)
chr1 (135-169)||(41763172-41763206)
chr1 (135-173)||(44732642-44732680)
chr1 (135-173)||(49868017-49868055)
chr1 (135-173)||(49875616-49875654)
chr1 (136-173)||(1408441-1408478)
chr1 (136-173)||(3431336-3431373)
chr1 (136-173)||(5270758-5270795)
chr1 (136-173)||(18056734-18056771)
chr1 (132-173)||(25365010-25365051)
chr1 (132-173)||(26256103-26256144)
chr1 (135-168)||(27533254-27533287)
chr1 (136-173)||(29935989-29936026)
chr1 (132-173)||(31060221-31060262)
chr1 (133-174)||(37014194-37014235)
chr1 (135-168)||(41974772-41974805)
chr1 (135-172)||(48264488-48264525)
chr1 (137-173)||(10356202-10356238)
chr1 (137-173)||(26550503-26550539)
chr1 (133-169)||(26674406-26674442)
chr1 (137-173)||(33229701-33229737)
chr1 (137-173)||(40634210-40634246)
chr1 (137-173)||(42735890-42735926)
[»] chr2 (41 HSPs)
chr2 (226-333)||(28020777-28020884)
chr2 (226-320)||(28020104-28020198)
chr2 (251-303)||(33045119-33045171)
chr2 (135-173)||(27152359-27152397)
chr2 (135-173)||(5168596-5168634)
chr2 (135-173)||(31815904-31815942)
chr2 (132-173)||(18324908-18324949)
chr2 (132-173)||(22359011-22359052)
chr2 (132-169)||(31156823-31156860)
chr2 (132-169)||(45032703-45032740)
chr2 (134-173)||(32609209-32609248)
chr2 (134-173)||(39408712-39408751)
chr2 (135-173)||(2256977-2257015)
chr2 (135-169)||(3197096-3197130)
chr2 (135-173)||(4897549-4897587)
chr2 (135-173)||(4944943-4944981)
chr2 (135-173)||(7772477-7772515)
chr2 (132-186)||(18881175-18881229)
chr2 (135-173)||(20239349-20239387)
chr2 (135-169)||(20565092-20565126)
chr2 (135-173)||(22267519-22267557)
chr2 (135-169)||(24592863-24592897)
chr2 (135-173)||(25395459-25395497)
chr2 (135-173)||(26133537-26133575)
chr2 (135-173)||(27935062-27935100)
chr2 (139-173)||(28644531-28644565)
chr2 (139-173)||(29809332-29809366)
chr2 (135-173)||(34977210-34977248)
chr2 (132-169)||(10195676-10195713)
chr2 (140-173)||(13922654-13922687)
chr2 (136-173)||(15462883-15462920)
chr2 (132-169)||(28771592-28771629)
chr2 (136-173)||(33041887-33041924)
chr2 (135-171)||(961111-961147)
chr2 (132-168)||(2783018-2783054)
chr2 (135-187)||(11560490-11560542)
chr2 (132-164)||(11931620-11931652)
chr2 (133-173)||(18789421-18789461)
chr2 (137-173)||(24581489-24581525)
chr2 (137-173)||(37352518-37352554)
chr2 (137-173)||(43146361-43146397)
[»] scaffold0091 (1 HSPs)
scaffold0091 (256-333)||(3581-3658)
[»] chr8 (40 HSPs)
chr8 (226-333)||(33181063-33181170)
chr8 (226-333)||(526795-526902)
chr8 (135-174)||(13105099-13105138)
chr8 (135-173)||(7553685-7553723)
chr8 (135-173)||(15079169-15079207)
chr8 (135-173)||(37999437-37999475)
chr8 (136-173)||(989595-989632)
chr8 (132-169)||(23816800-23816837)
chr8 (137-169)||(18942928-18942960)
chr8 (135-173)||(6447195-6447233)
chr8 (135-173)||(8442504-8442542)
chr8 (135-173)||(8984511-8984549)
chr8 (135-169)||(11708996-11709030)
chr8 (135-173)||(13357458-13357496)
chr8 (135-173)||(18959155-18959193)
chr8 (135-173)||(26799190-26799228)
chr8 (135-169)||(29908021-29908055)
chr8 (135-169)||(33451366-33451400)
chr8 (135-169)||(39821894-39821928)
chr8 (132-169)||(15572161-15572198)
chr8 (139-172)||(31511978-31512011)
chr8 (226-331)||(33180913-33181017)
chr8 (136-169)||(34968565-34968598)
chr8 (136-169)||(37938505-37938538)
chr8 (136-173)||(42575980-42576017)
chr8 (137-173)||(7388464-7388500)
chr8 (137-173)||(8034437-8034473)
chr8 (132-168)||(9067093-9067129)
chr8 (137-173)||(10083172-10083208)
chr8 (133-173)||(10601769-10601809)
chr8 (137-173)||(13406609-13406645)
chr8 (133-173)||(24212171-24212211)
chr8 (137-169)||(25163189-25163221)
chr8 (137-173)||(31450982-31451018)
chr8 (137-173)||(33617981-33618017)
chr8 (137-173)||(34472306-34472342)
chr8 (135-183)||(37141353-37141401)
chr8 (137-173)||(37717372-37717408)
chr8 (137-173)||(38344058-38344094)
chr8 (137-173)||(41458304-41458340)
[»] chr3 (49 HSPs)
chr3 (132-173)||(35126283-35126324)
chr3 (226-311)||(42933479-42933564)
chr3 (132-173)||(10922322-10922363)
chr3 (135-173)||(552180-552218)
chr3 (132-173)||(17588368-17588409)
chr3 (132-173)||(51882214-51882255)
chr3 (134-173)||(376652-376691)
chr3 (135-174)||(16663253-16663292)
chr3 (133-168)||(25016363-25016398)
chr3 (135-173)||(2078246-2078284)
chr3 (135-173)||(3176990-3177028)
chr3 (139-173)||(7464512-7464546)
chr3 (135-173)||(7738675-7738713)
chr3 (135-169)||(7974529-7974563)
chr3 (135-173)||(12976619-12976657)
chr3 (135-173)||(14771337-14771375)
chr3 (135-169)||(18870742-18870776)
chr3 (135-173)||(19468457-19468495)
chr3 (135-173)||(21914088-21914126)
chr3 (135-173)||(24145404-24145442)
chr3 (135-173)||(38130976-38131014)
chr3 (135-173)||(42401438-42401476)
chr3 (135-169)||(45431958-45431992)
chr3 (135-173)||(46226094-46226132)
chr3 (135-169)||(48315041-48315075)
chr3 (135-169)||(48511260-48511294)
chr3 (135-173)||(52992082-52992120)
chr3 (139-173)||(53633638-53633672)
chr3 (136-173)||(1757687-1757724)
chr3 (135-188)||(2662083-2662136)
chr3 (140-173)||(7617705-7617738)
chr3 (132-169)||(8113576-8113613)
chr3 (136-173)||(19126555-19126592)
chr3 (132-173)||(19883093-19883134)
chr3 (136-169)||(36431819-36431852)
chr3 (136-169)||(37921016-37921049)
chr3 (136-173)||(38094635-38094672)
chr3 (132-169)||(39216361-39216398)
chr3 (135-168)||(51469828-51469861)
chr3 (136-168)||(759612-759644)
chr3 (137-173)||(4200610-4200646)
chr3 (137-173)||(11436513-11436549)
chr3 (133-173)||(22486689-22486729)
chr3 (137-173)||(44364030-44364066)
chr3 (137-173)||(48234472-48234508)
chr3 (137-173)||(52309135-52309171)
chr3 (137-173)||(52974078-52974114)
chr3 (137-173)||(53432762-53432798)
chr3 (137-169)||(55066619-55066651)
[»] chr5 (42 HSPs)
chr5 (135-169)||(11017186-11017220)
chr5 (135-173)||(11720900-11720938)
chr5 (135-173)||(20258551-20258589)
chr5 (135-173)||(33654754-33654792)
chr5 (136-173)||(2642781-2642818)
chr5 (132-173)||(17046340-17046381)
chr5 (136-173)||(31198715-31198752)
chr5 (132-172)||(3389169-3389209)
chr5 (134-173)||(40091486-40091525)
chr5 (133-168)||(41417774-41417809)
chr5 (135-173)||(5107262-5107300)
chr5 (135-173)||(5974242-5974280)
chr5 (135-169)||(6489017-6489051)
chr5 (135-173)||(11647203-11647241)
chr5 (135-169)||(13044449-13044483)
chr5 (135-169)||(13114447-13114481)
chr5 (135-169)||(15889421-15889455)
chr5 (135-169)||(19068456-19068490)
chr5 (135-169)||(20211290-20211324)
chr5 (135-169)||(20370147-20370181)
chr5 (135-173)||(22498948-22498986)
chr5 (135-173)||(31545877-31545915)
chr5 (131-173)||(31877934-31877976)
chr5 (135-169)||(34436861-34436895)
chr5 (135-173)||(38495148-38495186)
chr5 (135-173)||(41650956-41650994)
chr5 (135-173)||(43108575-43108613)
chr5 (136-169)||(5485196-5485229)
chr5 (132-169)||(16094067-16094104)
chr5 (136-169)||(17861989-17862022)
chr5 (136-173)||(40056608-40056645)
chr5 (137-173)||(546811-546847)
chr5 (137-173)||(2362978-2363014)
chr5 (133-173)||(3156540-3156580)
chr5 (137-173)||(5900301-5900337)
chr5 (133-173)||(6237734-6237774)
chr5 (137-173)||(6414077-6414113)
chr5 (137-173)||(10241734-10241770)
chr5 (137-169)||(19985513-19985545)
chr5 (132-168)||(20206526-20206562)
chr5 (137-173)||(33736039-33736075)
chr5 (137-169)||(33952799-33952831)
[»] chr6 (20 HSPs)
chr6 (135-186)||(2726434-2726485)
chr6 (135-173)||(331903-331941)
chr6 (135-173)||(9977063-9977101)
chr6 (135-169)||(10780124-10780158)
chr6 (135-173)||(13732821-13732859)
chr6 (135-173)||(16403975-16404013)
chr6 (135-169)||(30639443-30639477)
chr6 (135-173)||(31971535-31971573)
chr6 (136-173)||(4922426-4922463)
chr6 (135-168)||(8637454-8637487)
chr6 (136-173)||(32524438-32524475)
chr6 (137-173)||(361172-361208)
chr6 (137-173)||(361760-361796)
chr6 (133-173)||(3373396-3373436)
chr6 (135-171)||(8916491-8916527)
chr6 (137-173)||(27094832-27094868)
chr6 (137-173)||(28222872-28222908)
chr6 (137-173)||(28237277-28237313)
chr6 (137-173)||(30938397-30938433)
chr6 (137-173)||(31802062-31802098)
[»] scaffold1160 (1 HSPs)
scaffold1160 (135-173)||(1729-1767)
[»] scaffold0238 (1 HSPs)
scaffold0238 (135-173)||(25395-25433)
[»] scaffold0182 (1 HSPs)
scaffold0182 (135-173)||(17788-17826)
[»] scaffold0126 (1 HSPs)
scaffold0126 (135-173)||(34905-34943)
[»] scaffold0533 (1 HSPs)
scaffold0533 (132-173)||(8865-8906)
[»] scaffold0161 (1 HSPs)
scaffold0161 (140-173)||(26704-26737)
[»] scaffold0122 (1 HSPs)
scaffold0122 (132-169)||(31169-31206)
[»] scaffold0007 (1 HSPs)
scaffold0007 (136-169)||(221031-221064)
[»] scaffold0690 (1 HSPs)
scaffold0690 (137-173)||(3675-3711)
[»] scaffold0038 (2 HSPs)
scaffold0038 (137-173)||(23370-23406)
scaffold0038 (137-173)||(37439-37475)
[»] scaffold0028 (1 HSPs)
scaffold0028 (137-173)||(112117-112153)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 52)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 227 - 404
Target Start/End: Complemental strand, 43444565 - 43444388
Alignment:
Q  227 tgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacatg 326  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43444565 tgagaatgacttctttatttgagaatgtgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacatg 43444466  T
Q  327 gaccatcgctgccttctttttatcaccaggttctaacacagctcccaaacctgcctctacgtttcttcttcttctcac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43444465 gaccatcgctgccttctttttatcaccaggttctaacacagctcccaaacctgcctctacgtttcttcttcttctcac 43444388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 45237292 - 45237429
Alignment:
Q  30 ttatttcaacatcaaatacaccattgattcagaataaaaataataatcaaatacaccatatgtatttgatattttattttggtggtggcaggttcaaatt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |    
T  45237292 ttatttcaacatcaaatacaccattgattcagaataaaaataataatcaaatacaccatatgtatttgatatttt-ttttggtggtggcgggttcaaact 45237390  T
Q  130 atgatcttgcatatattatgcattatccctaccaactga 168  Q
     | || |||||||||||||| ||||||| ||||| ||||    
T  45237391 ctaattttgcatatattatgtattatccataccacctga 45237429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 39458559 - 39458620
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaatattatgaggactattgaagt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458559 atcttgcatatattatgcattatccctaccaactgagttaatattatgaggactattgaagt 39458620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 17889518 - 17889605
Alignment:
Q  246 tgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacatggaccatc 333  Q
    |||||||||||||||||||| ||| ||||| ||||||||||| | ||||||||||||||||||||| | |||||| |  |||||||||    
T  17889518 tgagaatatgagaatacattatcagcccttcagattaaaatggagggcttagatttaatgtaccaataaaaacatcatgtggaccatc 17889605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 17888532 - 17888650
Alignment:
Q  215 ggatgtatcatgtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaat 314  Q
    |||||||||  |||||||||||||| |||| ||||||| |||||||||||| | | || || ||||||||||| | | ||||||||||||||||||| |     
T  17888532 ggatgtatccagtgagaatgacttccttatatgagaatgtgagaatacattattagccattcagattaaaatggaggacttagatttaatgtaccaataa 17888631  T
Q  315 aaacataacatggaccatc 333  Q
    |||||| | || |||||||    
T  17888632 aaacatcatatagaccatc 17888650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 17890475 - 17890406
Alignment:
Q  251 atatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacat 320  Q
    ||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||| | ||||||    
T  17890475 atatgagaatacattatcaacccttcagattaaaatggagggcttagatttaatgtaccaataaaaacat 17890406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 44941430 - 44941468
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44941430 cttgcatatattatgcattatccctaccaactgagttaa 44941468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 48626878 - 48626817
Alignment:
Q  224 atgtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaat 286  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | || |||||| ||||||||    
T  48626878 atgtgagaatgacttctttatgtgagaatgtgagaatacattat-aagcctttatattaaaat 48626817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 5833085 - 5833052
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||||||||||||||    
T  5833085 ttgcatatattatgcattatccctaccaactgag 5833052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 26816682 - 26816715
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||||||||||||||    
T  26816682 ttgcatatattatgcattatccctaccaactgag 26816715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 29461840 - 29461876
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29461840 tgcatatattatgcattgtccctaccaactgagttaa 29461876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 43443501 - 43443557
Alignment:
Q  216 gatgtatcatgtgagaatgacttctttatttgagaatatgagaatacattgtcaacc 272  Q
    |||||||||||||||||||||  |||||| ||||||| |||||||| ||| ||||||    
T  43443501 gatgtatcatgtgagaatgacaactttatatgagaatgtgagaatatattatcaacc 43443557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 2916146 - 2916108
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  2916146 cttgcatatattatgcattgtccgtaccaactgagttaa 2916108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 16537553 - 16537587
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    |||| ||||||||||||||||||||||||||||||    
T  16537553 cttgtatatattatgcattatccctaccaactgag 16537587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 16628109 - 16628075
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    |||| ||||||||||||||||||||||||||||||    
T  16628109 cttgtatatattatgcattatccctaccaactgag 16628075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 19599189 - 19599151
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  19599189 cttgcatatattatgcattgtccataccaactgagttaa 19599151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 21322219 - 21322181
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  21322219 cttgcatacattatgcattatccttaccaactgagttaa 21322181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 21554951 - 21554989
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  21554951 cttgcatatattaagcattatccctaccaactaagttaa 21554989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 22991408 - 22991446
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  22991408 cttgcatatattatgcattgtccataccaactgagttaa 22991446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 23413063 - 23413101
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  23413063 cttgcatatattatgcattgtccataccaactgagttaa 23413101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 25923435 - 25923397
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  25923435 cttgcatatattatgcattatccctactaactgatttaa 25923397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 27263385 - 27263347
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  27263385 cttgcatatattatgcattgtccataccaactgagttaa 27263347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 27270279 - 27270241
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  27270279 cttgcatatattatgcattgtccataccaactgagttaa 27270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 37230045 - 37230083
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  37230045 cttgcatatattatgcattttccttaccaactgagttaa 37230083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 40187657 - 40187691
Alignment:
Q  139 catatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||| |||||||||||||||||||    
T  40187657 catatattatgcattgtccctaccaactgagttaa 40187691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 44454556 - 44454518
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  44454556 cttgcatattttatgcattgtccctaccaactgagttaa 44454518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 1285083 - 1285124
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| | |||| ||||||||||||    
T  1285083 gatcttgcatatattatgcattgttcctatcaactgagttaa 1285124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 4346703 - 4346666
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaat 174  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  4346703 tgcatatattatgcattgtccctaccaactgagctaat 4346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 9819563 - 9819600
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| | |||||||||||||    
T  9819563 gatcttgcatatattatgcattgttcctaccaactgag 9819600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 10467133 - 10467166
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactga 168  Q
    |||||| |||||||||||||||||||||||||||    
T  10467133 cttgcaaatattatgcattatccctaccaactga 10467166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 10721488 - 10721525
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| | |||||||||||||    
T  10721488 gatcttgcatatattatgcattgttcctaccaactgag 10721525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 18223737 - 18223778
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||| |||||| |||||| |||||||||||||||||||||    
T  18223737 gatcttacatataatatgcaatatccctaccaactgagttaa 18223778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 18505671 - 18505708
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  18505671 gatcttgcatattttatgcattgtccctaccaactgag 18505708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 21164780 - 21164813
Alignment:
Q  140 atatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||| |||||||||||||||    
T  21164780 atatattatgcattatccataccaactgagttaa 21164813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 34773275 - 34773242
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactga 168  Q
    ||||||||||||||||||| ||||||||||||||    
T  34773275 cttgcatatattatgcattgtccctaccaactga 34773242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 39801753 - 39801716
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  39801753 gatcttgcatatattatgcattgtccataccaactgag 39801716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 47342451 - 47342504
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaatattatgaggactat 188  Q
    ||||||||||||||||||| |||  ||||||||||||||  | |||||||||||    
T  47342451 cttgcatatattatgcattgtccaaaccaactgagttaagctcatgaggactat 47342504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 48837910 - 48837873
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  48837910 ttgcatatattatgcattatccataccaattgagttaa 48837873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 3766856 - 3766820
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  3766856 tgcatataatatgcaatatccctaccaactgagttaa 3766820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 4340172 - 4340132
Alignment:
Q  134 tcttgcatatattatgcattatccctaccaactgagttaat 174  Q
    |||||||||||||||||||| ||| ||||||||||| ||||    
T  4340172 tcttgcatatattatgcattgtccttaccaactgagctaat 4340132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 9712223 - 9712259
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  9712223 tgcatataatatgcaatatccctaccaactgagttaa 9712259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 14046626 - 14046662
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| || |||||||||||    
T  14046626 atcttgcatatattatgcattacccataccaactgag 14046662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 14356656 - 14356692
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| || |||||||||||    
T  14356656 atcttgcatatattatgcattacccataccaactgag 14356692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 15106716 - 15106752
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  15106716 tgcatataatatgcaatatccctaccaactgagttaa 15106752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 21751641 - 21751681
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| | |||||||||| ||||||    
T  21751641 atcttgcatatattatgcatttttcctaccaactaagttaa 21751681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 22267627 - 22267587
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||| ||||||||||||||| || ||||||||||||||||    
T  22267627 atcttacatatattatgcattgtctctaccaactgagttaa 22267587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 24991827 - 24991791
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  24991827 atcttgcatatattatgcattgtccttaccaactgag 24991791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 28800046 - 28800082
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||| |||||||||| |||||||||||||||||||    
T  28800046 tgcataaattatgcattgtccctaccaactgagttaa 28800082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 29625966 - 29625930
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  29625966 tgcatataatatgcaatatccctaccaactgagttaa 29625930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 38889518 - 38889554
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  38889518 tgcatataatatgcaatatccctaccaactgagttaa 38889554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 45223769 - 45223813
Alignment:
Q  215 ggatgtatcatgtgagaatgacttctttatttgagaatatgagaa 259  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||||    
T  45223769 ggatgtatcatgtgagaatgacaactttatatgagaatgtgagaa 45223813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 48288426 - 48288462
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  48288426 tgcatataatatgcaatatccctaccaactgagttaa 48288462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 46515005 - 46514885
Alignment:
Q  215 ggatgtatcatgtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaat 314  Q
    ||||||||||  ||||||||||||  |||| ||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||| || |||||||    
T  46515005 ggatgtatcacatgagaatgactttgttatatgagaatgtgagaatacaatatcagccctttagattaaaatgaaaggcttagatttaaagttccaaaat 46514906  T
Q  315 aaacataacatggaccatcgc 335  Q
    |||||| |  |||||||||||    
T  46514905 aaacatcaggtggaccatcgc 46514885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 46514196 - 46514317
Alignment:
Q  215 ggatgtatcatgtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaat 314  Q
    ||||||||||  ||||||||||||  |||| ||||||| |||||||||| | ||| ||||||||||||||||||||| ||||||||||| || |||||||    
T  46514196 ggatgtatcacatgagaatgactttgttatatgagaatgtgagaatacaatatcagccctttagattaaaatgaaagacttagatttaaagttccaaaat 46514295  T
Q  315 aaacataacatggaccatcgct 336  Q
    |||||| |  ||||||||||||    
T  46514296 aaacatcaggtggaccatcgct 46514317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 311
Target Start/End: Original strand, 16897598 - 16897694
Alignment:
Q  215 ggatgtatcatgtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaa 311  Q
    |||||||||  ||||||||||||||  ||| ||||||| |||||||||||| |   ||||| ||||||||||| | |||||||||||||||||||||    
T  16897598 ggatgtatctagtgagaatgacttccgtatgtgagaatgtgagaatacattatttgcccttcagattaaaatggagggcttagatttaatgtaccaa 16897694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 53523766 - 53523703
Alignment:
Q  270 accctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacatggaccatc 333  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||||| || |||||||||    
T  53523766 accctttagatttaaatgaaagacttagatttaaagtaccaaaataaacattacgtggaccatc 53523703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 2905500 - 2905427
Alignment:
Q  330 catcgctgccttctttttatcaccaggttctaacacagctcccaaacctgcctctacgtttcttcttcttctcac 404  Q
    ||||||||||||||||| ||| ||| |||||||||||    ||||||||||||||||||||||||||||||||||    
T  2905500 catcgctgccttcttttcatctccatgttctaacaca-aaaccaaacctgcctctacgtttcttcttcttctcac 2905427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 44817729 - 44817847
Alignment:
Q  215 ggatgtatcatgtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaat 314  Q
    |||||||||  |||||||||||||| |||| ||||||| |||||||||||| | | || || ||||||||||| | | ||| ||||||||||||||| |     
T  44817729 ggatgtatccagtgagaatgacttccttatatgagaatgtgagaatacattattagccattcagattaaaatggaggacttggatttaatgtaccaataa 44817828  T
Q  315 aaacataacatggaccatc 333  Q
    |||||| | || |||||||    
T  44817829 aaacatcatatagaccatc 44817847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 33353006 - 33352899
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacat 325  Q
    |||||||||||||  |||| ||||||| |||||||| |||  ||  | ||||||||||||||||||| ||||||||||||| |||| | || ||| || |    
T  33353006 gtgagaatgactttcttatatgagaatgtgagaatatattaacagtcatttagattaaaatgaaaggtttagatttaatgttccaataaaagcatcacgt 33352907  T
Q  326 ggaccatc 333  Q
    ||||||||    
T  33352906 ggaccatc 33352899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 20096287 - 20096325
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20096287 cttgcatatattatgcattatccctaccaactgagttaa 20096325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 21318270 - 21318308
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  21318270 cttgcatatattatgcattgtccctaccaactgagttaa 21318308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 41520998 - 41520948
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaatattatgaggac 185  Q
    ||||||||||||||||||| || ||||||||||||||||  ||||||||||    
T  41520998 cttgcatatattatgcattgtctctaccaactgagttaagcttatgaggac 41520948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 50442764 - 50442798
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||||||||||||||||    
T  50442764 cttgcatatattatgcattatccctaccaactgag 50442798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 55430640 - 55430602
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  55430640 cttgcatatattatgcattattcctaccaactgagttaa 55430602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 8027411 - 8027448
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||||||| |||||||||||    
T  8027411 gatcttgcatatattatgcattatccttaccaactgag 8027448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 8495034 - 8494997
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| |||||||||||||||    
T  8495034 gatcttgcatatattatgcattgtccctaccaactgag 8494997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 14197445 - 14197486
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  14197445 gatcttacatatattatgcattgtccctaccaactgagttaa 14197486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 2649750 - 2649784
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  2649750 cttgcatatattatgcattgtccctaccaactgag 2649784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 4360661 - 4360695
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||| ||||||||||||||||    
T  4360661 cttgcatatattatgcatcatccctaccaactgag 4360695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 13276173 - 13276135
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  13276173 cttgcatatattatgcattgtccctaccaattgagttaa 13276135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 17423194 - 17423232
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  17423194 cttgcatatattatgcattgtctctaccaactgagttaa 17423232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 19908736 - 19908698
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  19908736 cttgcatatattatgcattgtccttaccaactgagttaa 19908698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 20799411 - 20799445
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  20799411 cttgcatatattatgcattgtccctaccaactgag 20799445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 25783195 - 25783157
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  25783195 cttgcatatactatgtattatccctaccaactgagttaa 25783157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 29908100 - 29908062
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  29908100 cttgcatatattatgcattgtccttaccaactgagttaa 29908062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 169
Target Start/End: Complemental strand, 32006540 - 32006510
Alignment:
Q  139 catatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||||||||||||    
T  32006540 catatattatgcattatccctaccaactgag 32006510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 38375001 - 38374963
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  38375001 cttgcatatattatgcattgtccctaccaactaagttaa 38374963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 38416101 - 38416067
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  38416101 cttgcatatattatgcattatccttaccaactgag 38416067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 43034359 - 43034397
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  43034359 cttgcatatattatgcattgtccataccaactgagttaa 43034397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 50362156 - 50362190
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  50362156 cttgcatatattatgcattgtccctaccaactgag 50362190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 53190339 - 53190305
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  53190339 cttgcatatattatgcattatccataccaactgag 53190305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 56204991 - 56204953
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  56204991 cttgcatatattatgcattgtccttaccaactgagttaa 56204953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 19854612 - 19854575
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  19854612 gatcttgcatatattatgcattgtccataccaactgag 19854575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 21623436 - 21623469
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactga 168  Q
    ||||||||||||||||||| ||||||||||||||    
T  21623436 cttgcatatattatgcattgtccctaccaactga 21623469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 33900738 - 33900775
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  33900738 gatcttgcatatattatgcattgtccttaccaactgag 33900775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 38812863 - 38812900
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  38812863 gatcttgcatatattatgcattgtccctaccgactgag 38812900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 41897572 - 41897609
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaat 174  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  41897572 tgcatatattatgcaatatccctaccaactaagttaat 41897609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 43155126 - 43155089
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||||||| || ||||||||    
T  43155126 gatcttgcatatattatgcattatccataacaactgag 43155089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 54151643 - 54151680
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  54151643 ttgcatatattatacattatccttaccaactgagttaa 54151680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 3036080 - 3036116
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  3036080 tgcatataatatgcaatatccctaccaactgagttaa 3036116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 12167641 - 12167677
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  12167641 tgcatataatatgcaatatccctaccaactgagttaa 12167677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 13304157 - 13304117
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||| |||||||||| ||||||||||||||| |||||||    
T  13304157 atcttgtatatattatgtattatccctaccaaccgagttaa 13304117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 13578490 - 13578526
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  13578490 tgcatataatatgcaatatccctaccaactgagttaa 13578526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 23225911 - 23225871
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||| ||| | |||||||||||||||||    
T  23225911 atcttgcatatattatgaattgttcctaccaactgagttaa 23225871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 23775562 - 23775530
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactg 167  Q
    ||||||||||||||||||| |||||||||||||    
T  23775562 cttgcatatattatgcattgtccctaccaactg 23775530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 24063223 - 24063263
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| || ||| ||||||||||||    
T  24063223 atcttgcatatattatgcattgtctctatcaactgagttaa 24063263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 25134735 - 25134703
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaa 164  Q
    ||||||||||||||||||||||||| |||||||    
T  25134735 gatcttgcatatattatgcattatctctaccaa 25134703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 33758821 - 33758849
Alignment:
Q  135 cttgcatatattatgcattatccctacca 163  Q
    |||||||||||||||||||||||||||||    
T  33758821 cttgcatatattatgcattatccctacca 33758849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 45970722 - 45970762
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| |  ||||||||||||||||    
T  45970722 atcttgcatatattatgcattgtttctaccaactgagttaa 45970762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 48067177 - 48067141
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagtt 171  Q
    |||||||||||||| |||| |||||||||||||||||    
T  48067177 cttgcatatattatacattgtccctaccaactgagtt 48067141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 52798323 - 52798287
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  52798323 tgcatataatatgcaatatccctaccaactgagttaa 52798287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 56479251 - 56479287
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  56479251 tgcatataatatgcaatatccctaccaactgagttaa 56479287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 223 - 366
Target Start/End: Complemental strand, 13259756 - 13259614
Alignment:
Q  223 catgtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataa 322  Q
    |||||||||||||||| ||||| ||||||| | |||||||| | ||| || |||||||||||||||||||||||||||||| || ||||||||||||| |    
T  13259756 catgtgagaatgacttttttatgtgagaatgtaagaatacaatatcagccttttagattaaaatgaaaggcttagatttaaagttccaaaataaacatca 13259657  T
Q  323 catggaccatcgctgccttctttttatcaccaggttctaacaca 366  Q
      ||||||||||||  ||||||||| || || ||||| ||||||    
T  13259656 ggtggaccatcgct-tcttctttttttctccgggttccaacaca 13259614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 226 - 333
Target Start/End: Original strand, 26778866 - 26778973
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacat 325  Q
    ||||||||||||| |||   ||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |  |    
T  26778866 gtgagaatgacttatttgcatgagaatgtgagaatgcattatcaaccctttagatttaaatgaaaggcttagatttaatgtaccaaaataaacattatgt 26778965  T
Q  326 ggaccatc 333  Q
    ||||||||    
T  26778966 ggaccatc 26778973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 336
Target Start/End: Complemental strand, 29117496 - 29117386
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacat 325  Q
    |||||||||| |||||||| ||||||| | |||||||| | ||| ||||||||||||||||||||||||||||||||| || |||||||||| ||||  |    
T  29117496 gtgagaatgatttctttatgtgagaatgtaagaatacaatatcagccctttagattaaaatgaaaggcttagatttaaagttccaaaataaatataaggt 29117397  T
Q  326 ggaccatcgct 336  Q
    |||||||||||    
T  29117396 ggaccatcgct 29117386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 29116709 - 29116818
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacat 325  Q
    |||||||||| |||||||| ||||||| | |||||||| | ||| |||||||||||||||| |||||||||||||||| || ||||||||||||| |  |    
T  29116709 gtgagaatgatttctttatgtgagaatgtaagaatacaatatcagccctttagattaaaataaaaggcttagatttaaagttccaaaataaacatcaggt 29116808  T
Q  326 ggaccatcgc 335  Q
    ||||||||||    
T  29116809 ggaccatcgc 29116818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 13258964 - 13259071
Alignment:
Q  227 tgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaa-ggcttagatttaatgtaccaaaataaacataacat 325  Q
    |||||||||||||||||| ||||||| |||||||||| | |||  ||||||||||||||||||| ||||||||||||| || ||||||||||||| |  |    
T  13258964 tgagaatgacttctttatatgagaatgtgagaatacaatatcagtcctttagattaaaatgaaatggcttagatttaaagttccaaaataaacatcaggt 13259063  T
Q  326 ggaccatc 333  Q
    ||||||||    
T  13259064 ggaccatc 13259071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 27773239 - 27773345
Alignment:
Q  227 tgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacatg 326  Q
    ||||||||||||  |||| ||||| | |||||||| ||| ||| ||||| ||||||||||||| |||||| |||||||||||||| | |||||| |||||    
T  27773239 tgagaatgactttcttatgtgagagtgtgagaatatattatcagcccttcagattaaaatgaagggcttaaatttaatgtaccaataaaaacatcacatg 27773338  T
Q  327 gaccatc 333  Q
    |||||||    
T  27773339 gaccatc 27773345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 1170147 - 1170039
Alignment:
Q  226 gtgagaatgacttctttatttgagaat-atgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataaca 324  Q
    ||||||||| ||||||||| ||||||| ||||||||||||| | | || || ||||||||||| | | ||||||||||||||||||| | |||||| | |    
T  1170147 gtgagaatgtcttctttatgtgagaatgatgagaatacattattagccattcagattaaaatggaggacttagatttaatgtaccaataaaaacatcata 1170048  T
Q  325 tggaccatc 333  Q
    | |||||||    
T  1170047 tagaccatc 1170039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 19396208 - 19396246
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19396208 cttgcatatattatgcattatccctaccaactgagttaa 19396246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 28677229 - 28677311
Alignment:
Q  251 atatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacatggaccatc 333  Q
    |||| |||||||||| |  |||||| ||||||||||| | ||||||||||||| |||||||   |||||||||||||||||||    
T  28677229 atataagaatacattattgacccttgagattaaaatggacggcttagatttaaagtaccaattaaaacataacatggaccatc 28677311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 12852216 - 12852257
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  12852216 gatcttacatatattatgcattatccctaccaactgagttaa 12852257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 24631886 - 24631845
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  24631886 gatcttgcatatattatgcattatccttaccaactgagttaa 24631845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 41972749 - 41972785
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||||||||||||||    
T  41972749 tgcatatattatgcattatccctaccaactgagttaa 41972785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 1854321 - 1854275
Alignment:
Q  127 attatgatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  1854321 attatgaccttgcatctattatgcattattcctaccaactgagttaa 1854275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 2889943 - 2889981
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2889943 cttgcatatattatgcattgtccctaccaactgagttaa 2889981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 47719124 - 47719162
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  47719124 cttgcatatattatgcattatccttaccaactgagttaa 47719162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 12212338 - 12212301
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  12212338 ttgcatatattatgcattatccctaccaaatgagttaa 12212301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 29042584 - 29042543
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  29042584 gatcttacatatattatgcattatccctaccaattgagttaa 29042543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 30248100 - 30248060
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  30248100 atcttacatatattatgcattatccctgccaactgagttaa 30248060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 40618955 - 40618916
Alignment:
Q  134 tcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  40618955 tcttgcatatattatgcattatctttaccaactgagttaa 40618916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 46579663 - 46579694
Alignment:
Q  132 gatcttgcatatattatgcattatccctacca 163  Q
    ||||||||||||||||||||||||||||||||    
T  46579663 gatcttgcatatattatgcattatccctacca 46579694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 9872122 - 9872156
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  9872122 cttgcatatattatgcattatccttaccaactgag 9872156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 21400040 - 21400074
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  21400040 cttgcatatattatgcattgtccctaccaactgag 21400074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 28039877 - 28039915
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  28039877 cttgcatatattatgcattgtccttaccaactgagttaa 28039915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 29800577 - 29800539
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  29800577 cttgcatattttatgcattatccttaccaactgagttaa 29800539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 30678834 - 30678868
Alignment:
Q  139 catatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||| |||||||||||||||||||    
T  30678834 catatattatgcattgtccctaccaactgagttaa 30678868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 32497498 - 32497536
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  32497498 cttgcatatattatgcattgttcctaccaactgagttaa 32497536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 33153901 - 33153935
Alignment:
Q  139 catatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||| |||||||||||||||||||    
T  33153901 catatattatgcattgtccctaccaactgagttaa 33153935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 41573290 - 41573324
Alignment:
Q  139 catatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||| |||||||||||||||||||    
T  41573290 catatattatgcattgtccctaccaactgagttaa 41573324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 41763172 - 41763206
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||| |||||||||||||||||||||||||    
T  41763172 cttgcatattttatgcattatccctaccaactgag 41763206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 44732680 - 44732642
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  44732680 cttgcatataatatgcaatatccctaccaactgagttaa 44732642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 49868055 - 49868017
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  49868055 cttgcatatattatgcattatccatatcaactgagttaa 49868017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 49875616 - 49875654
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  49875616 cttgcatatattatgcattgtccttaccaactgagttaa 49875654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 1408478 - 1408441
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  1408478 ttgcatatattatgcattgtccttaccaactgagttaa 1408441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 3431373 - 3431336
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||| | |||||||||||||||||    
T  3431373 ttgcatatattatgcattcttcctaccaactgagttaa 3431336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 5270758 - 5270795
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  5270758 ttgcatatattatgcattatctctactaactgagttaa 5270795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 18056734 - 18056771
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  18056734 ttgcatatattatgcattgtccttaccaactgagttaa 18056771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 25365010 - 25365051
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  25365010 gatcttgcatatattatgcattgttcttaccaactgagttaa 25365051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 26256103 - 26256144
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||| || || ||||||||||||    
T  26256103 gatcttgcatatattatgcattacccttatcaactgagttaa 26256144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 27533287 - 27533254
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactga 168  Q
    ||||||||||||||||||| ||||||||||||||    
T  27533287 cttgcatatattatgcattgtccctaccaactga 27533254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 29936026 - 29935989
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  29936026 ttgcatatattatgcattgtccataccaactgagttaa 29935989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 31060221 - 31060262
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||    
T  31060221 gatcttgcatatattatgcattatctctatcaactgaattaa 31060262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 37014194 - 37014235
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaat 174  Q
    |||||| ||||||||||||||| || ||||||||||||||||    
T  37014194 atcttgtatatattatgcattaaccataccaactgagttaat 37014235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 41974805 - 41974772
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactga 168  Q
    |||||||||||||||||||||||||| |||||||    
T  41974805 cttgcatatattatgcattatccctatcaactga 41974772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 48264488 - 48264525
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagtta 172  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  48264488 cttgcatattttatgcattatccataccaactgagtta 48264525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 10356202 - 10356238
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  10356202 tgcatatattatgcattgtccataccaactgagttaa 10356238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 26550539 - 26550503
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  26550539 tgcatatagtatgcaatatccctaccaactgagttaa 26550503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 26674442 - 26674406
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26674442 atcttgcatattttatgcattatcccaaccaactgag 26674406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 33229701 - 33229737
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||| | |||||||||||||||||    
T  33229701 tgcatatattatgcattgttcctaccaactgagttaa 33229737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 40634246 - 40634210
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  40634246 tgcatataatatgcaatatccctaccaactgagttaa 40634210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 42735926 - 42735890
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  42735926 tgcatatattatgcattttccctaccaaatgagttaa 42735890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 28020884 - 28020777
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacat 325  Q
    ||||||||||||||||||| ||||||| |||||||||| | ||| |||||||||||||||||||| ||| |||||||| || ||||||||||||| |  |    
T  28020884 gtgagaatgacttctttatctgagaatgtgagaatacaatatcagccctttagattaaaatgaaaagctcagatttaaagttccaaaataaacatcaggt 28020785  T
Q  326 ggaccatc 333  Q
    ||||||||    
T  28020784 ggaccatc 28020777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 28020104 - 28020198
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacat 320  Q
    ||||||||||| ||||||| ||||||| | |||||||| | ||| |||||||||||||||||||||||||||||||||  | |||||||||||||    
T  28020104 gtgagaatgacatctttatgtgagaatgtaagaatacaatatcagccctttagattaaaatgaaaggcttagatttaaaattccaaaataaacat 28020198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 33045119 - 33045171
Alignment:
Q  251 atatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaa 303  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||||||    
T  33045119 atatgagaatccattatcaaccctttagattaaaatgaatggcttagatttaa 33045171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 27152397 - 27152359
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27152397 cttgcatatattatgcattatccctaccaactgagttaa 27152359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 5168596 - 5168634
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  5168596 cttgcatatattatgcattatccctatcaactgagttaa 5168634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 31815904 - 31815942
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  31815904 cttgcatatattatgcattgtccctaccaactgagttaa 31815942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 18324908 - 18324949
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  18324908 gatcttgcatatattatgcattgtccttaccaactgagttaa 18324949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 22359052 - 22359011
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  22359052 gatcttgcatatattatgcattgtccttaccaactgagttaa 22359011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 31156860 - 31156823
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31156860 gatcttacatatattatgcattatccctaccaactgag 31156823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 45032740 - 45032703
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| |||||||||||||||    
T  45032740 gatcttgcatatattatgcattgtccctaccaactgag 45032703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 32609209 - 32609248
Alignment:
Q  134 tcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  32609209 tcttgcatataatatgcaatatccctaccaactgagttaa 32609248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 39408712 - 39408751
Alignment:
Q  134 tcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  39408712 tcttgcatataatatgcaatatccctaccaactgagttaa 39408751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 2257015 - 2256977
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  2257015 cttgcatatattatgcattgtccataccaactgagttaa 2256977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 3197096 - 3197130
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  3197096 cttgcatatattatgcattgtccctaccaactgag 3197130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 4897587 - 4897549
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  4897587 cttgcatatattatgcattgtccttaccaactgagttaa 4897549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 4944981 - 4944943
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  4944981 cttgcatatattatgcattgtccttaccaactgagttaa 4944943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 7772477 - 7772515
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  7772477 cttgcatatattatgcattatccttaccaattgagttaa 7772515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 18881175 - 18881229
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaatattatgaggact 186  Q
    |||||||||||| |||||||||||||| |||||||||| |||  ||| |||||||    
T  18881175 gatcttgcatattttatgcattatcccaaccaactgagctaaacttacgaggact 18881229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 20239387 - 20239349
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  20239387 cttgcatatattatgcattatccctatcaattgagttaa 20239349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 20565092 - 20565126
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  20565092 cttgcatatattatgcattgtccctaccaactgag 20565126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 22267557 - 22267519
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  22267557 cttgcatatattatgcattgtccgtaccaactgagttaa 22267519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 24592863 - 24592897
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  24592863 cttgcatatattatgcattgtccctaccaactgag 24592897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 25395459 - 25395497
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  25395459 cttgcatatattatgcattgttcctaccaactgagttaa 25395497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 26133537 - 26133575
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  26133537 cttgcatatattatgcattgtccttaccaactgagttaa 26133575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 27935100 - 27935062
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  27935100 cttgcatatattctgcattgtccctaccaactgagttaa 27935062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 28644565 - 28644531
Alignment:
Q  139 catatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||| |||||||||||||||||||    
T  28644565 catatattatgcattgtccctaccaactgagttaa 28644531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 29809366 - 29809332
Alignment:
Q  139 catatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||| |||||||||||||||||||    
T  29809366 catatattatgcattgtccctaccaactgagttaa 29809332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 34977248 - 34977210
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  34977248 cttgcatatattatgcattgtccataccaactgagttaa 34977210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 10195676 - 10195713
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||||||| || ||||||||    
T  10195676 gatcttgcatatattatgcattatccatatcaactgag 10195713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 13922654 - 13922687
Alignment:
Q  140 atatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||| |||||||||||||||||||    
T  13922654 atatattatgcattgtccctaccaactgagttaa 13922687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 15462920 - 15462883
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  15462920 ttgcatatattatgcattgtccataccaactgagttaa 15462883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 28771629 - 28771592
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  28771629 gatcttgcatatattatgcattgtccttaccaactgag 28771592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 33041887 - 33041924
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  33041887 ttgcatataatatgcaatatccctaccaactgagttaa 33041924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 961147 - 961111
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagtt 171  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  961147 cttgcatatattatgcattgtccctaccaattgagtt 961111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 2783054 - 2783018
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactga 168  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  2783054 gatcttgcatatattatacattatctctaccaactga 2783018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 11560542 - 11560490
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaatattatgaggacta 187  Q
    ||||||||||||||||||| |||||||||| |||| |||  | ||||||||||    
T  11560542 cttgcatatattatgcattgtccctaccaattgagctaagctcatgaggacta 11560490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 11931652 - 11931620
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaa 164  Q
    |||||||||||||||||||||| ||||||||||    
T  11931652 gatcttgcatatattatgcattgtccctaccaa 11931620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 18789461 - 18789421
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| |||  ||||||||||||||    
T  18789461 atcttgcatatattatgcattgtccaaaccaactgagttaa 18789421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 24581489 - 24581525
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  24581489 tgcatatattatgcaatatccctgccaactgagttaa 24581525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 37352518 - 37352554
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  37352518 tgcatataatatgcaatatccctaccaactgagttaa 37352554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 43146397 - 43146361
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||| |||||||| |||||||||||||||||||||    
T  43146397 tgcataaattatgcaatatccctaccaactgagttaa 43146361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 3658 - 3581
Alignment:
Q  256 agaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacatggaccatc 333  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  3658 agaatgcattatcaaccctttagatttaaatgaaaggcttagatttaatgtaccaaaataaacattatgtggaccatc 3581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 33181170 - 33181063
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacat 325  Q
    |||||||||||||  |||||||||||| |||||||| ||| ||| || |||| ||||||||||| |||||||||||| |||||||| | |||||| || |    
T  33181170 gtgagaatgactttcttatttgagaatgtgagaatatattatcagccttttaaattaaaatgaagggcttagatttactgtaccaataaaaacatcacgt 33181071  T
Q  326 ggaccatc 333  Q
    | ||||||    
T  33181070 gcaccatc 33181063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 333
Target Start/End: Original strand, 526795 - 526902
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacat 325  Q
    |||||||||||||| |||| ||||||| |||||||||||| | | || || ||||||||||| | | ||||||||||||||||||| | |||||| | ||    
T  526795 gtgagaatgacttccttatatgagaatgtgagaatacattattagccattcagattaaaatggaggacttagatttaatgtaccaataaaaacatcatat 526894  T
Q  326 ggaccatc 333  Q
     |||||||    
T  526895 agaccatc 526902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 13105138 - 13105099
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaat 174  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  13105138 cttgcatatattatgcattgtccctaccaactgagttaat 13105099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 7553723 - 7553685
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  7553723 cttgcatatattatgcattgtccctaccaactgagttaa 7553685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 15079169 - 15079207
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  15079169 cttgcatatattatgcattgtccctaccaactgagttaa 15079207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 37999437 - 37999475
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  37999437 cttgcatatattatgcattatccataccaactgagttaa 37999475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 989595 - 989632
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||| |||||||||||||||||||||||||    
T  989595 ttgcatatattaggcattatccctaccaactgagttaa 989632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 23816837 - 23816800
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||||||| |||||||||||    
T  23816837 gatcttgcatatattatgcattatccttaccaactgag 23816800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 18942960 - 18942928
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||||||||||||||    
T  18942960 tgcatatattatgcattatccctaccaactgag 18942928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 6447233 - 6447195
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  6447233 cttgcatatattatgcattgtccataccaactgagttaa 6447195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 8442504 - 8442542
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  8442504 cttgcatatattatgcattgtccttaccaactgagttaa 8442542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 8984511 - 8984549
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  8984511 cttgcatatattatacattatccataccaactgagttaa 8984549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 11709030 - 11708996
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  11709030 cttgcatatattatgcattgtccctaccaactgag 11708996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 13357458 - 13357496
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  13357458 cttgcatatattatgcattgtccataccaactgagttaa 13357496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 18959193 - 18959155
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  18959193 cttgcatatattatgcattatccctaacaattgagttaa 18959155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 26799228 - 26799190
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  26799228 cttgcatattttatgcattgtccctaccaactgagttaa 26799190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 29908055 - 29908021
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  29908055 cttgcatatattatgcattgtccctaccaactgag 29908021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 33451366 - 33451400
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  33451366 cttgcatatattatgcattatccataccaactgag 33451400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 39821928 - 39821894
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  39821928 cttgcatatattatgcattgtccctaccaactgag 39821894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 15572198 - 15572161
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  15572198 gatcttgcatatattatgttttatccctaccaactgag 15572161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 31512011 - 31511978
Alignment:
Q  139 catatattatgcattatccctaccaactgagtta 172  Q
    ||||||||||||||| ||||||||||||||||||    
T  31512011 catatattatgcattgtccctaccaactgagtta 31511978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 33180913 - 33181017
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaaaataaacataacat 325  Q
    |||| ||||||||  |||| ||||||| |||||||| ||| ||| |  |||||||||||||||| ||  || ||||||||||||| || |||||| ||||    
T  33180913 gtgataatgactttcttatgtgagaatgtgagaatatattatcagctttttagattaaaatgaagggtctaaatttaatgtaccataa-aaacatcacat 33181011  T
Q  326 ggacca 331  Q
    | ||||    
T  33181012 gtacca 33181017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 34968598 - 34968565
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| |||||||||||    
T  34968598 ttgcatatattatgcattatccataccaactgag 34968565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 37938538 - 37938505
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| |||||||||||    
T  37938538 ttgcatatattatgcattatccataccaactgag 37938505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 42575980 - 42576017
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  42575980 ttgcatatattatgcattatccataccgactgagttaa 42576017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 7388500 - 7388464
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  7388500 tgcatataatatgcaatatccctaccaactgagttaa 7388464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 8034437 - 8034473
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  8034437 tgcatataatatgcaatatccctaccaactgagttaa 8034473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 9067129 - 9067093
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactga 168  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  9067129 gatcttgcataaattatgcattatccttaccaactga 9067093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 10083208 - 10083172
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  10083208 tgcatataatatgcaatatccctaccaactgagttaa 10083172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 10601809 - 10601769
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| ||| |||||||||| ||||    
T  10601809 atcttgcatatattatgcattgtccataccaactgaattaa 10601769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 13406645 - 13406609
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  13406645 tgcatataatatgcaatatccctaccaactgagttaa 13406609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 24212171 - 24212211
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| ||| || ||||||||||||    
T  24212171 atcttgcatatattatgcattgtccatagcaactgagttaa 24212211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 25163221 - 25163189
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||||| |||||||    
T  25163221 tgcatatattatgcattatccctactaactgag 25163189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 31450982 - 31451018
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  31450982 tgcatataatatgcaatatccctaccaactgagttaa 31451018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 33618017 - 33617981
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  33618017 tgcatataatatgcaatatccctaccaactgagttaa 33617981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 34472342 - 34472306
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  34472342 tgcatataatatgcaatatccctaccaactgagttaa 34472306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 37141401 - 37141353
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaatattatgagg 183  Q
    ||||||||||||||||||| ||| |||||||||| ||||  ||||||||    
T  37141401 cttgcatatattatgcattgtccataccaactgaattaagtttatgagg 37141353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 37717408 - 37717372
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  37717408 tgcatataatatgcaatatccctaccaactgagttaa 37717372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 38344094 - 38344058
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  38344094 tgcatataatatgcaatatccctaccaactgagttaa 38344058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 41458340 - 41458304
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  41458340 tgcatataatatgcaatatccctaccaactgagttaa 41458304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 35126283 - 35126324
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35126283 gatcttgcatatattatgcattatccctaccaactgagttaa 35126324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 42933564 - 42933479
Alignment:
Q  226 gtgagaatgacttctttatttgagaatatgagaatacattgtcaaccctttagattaaaatgaaaggcttagatttaatgtaccaa 311  Q
    |||||||||||||  |||| | ||||| |||||||| ||| ||| | ||||||||||||||||| |||||| ||||||||||||||    
T  42933564 gtgagaatgactttattatataagaatgtgagaatatattatcagctctttagattaaaatgaagggcttaaatttaatgtaccaa 42933479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 10922322 - 10922363
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  10922322 gatcttgcatatattatgcattgtccctaccaactgagttaa 10922363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 552218 - 552180
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  552218 cttgcatatattatgcaatatccctaccaactgagttaa 552180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 17588409 - 17588368
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  17588409 gatcttgcatatattatgcattgtccttaccaactgagttaa 17588368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 51882214 - 51882255
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  51882214 gatcttgcatatattatgcattgtccataccaactgagttaa 51882255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 376691 - 376652
Alignment:
Q  134 tcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  376691 tcttgcatatattatgcattatctctaccaaccgagttaa 376652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 16663253 - 16663292
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaat 174  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  16663253 cttgcatatattatgcattatccataccaactgagataat 16663292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 25016398 - 25016363
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactga 168  Q
    |||||||||||||||||||||||||||| |||||||    
T  25016398 atcttgcatatattatgcattatccctatcaactga 25016363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 2078284 - 2078246
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  2078284 cttgcatatattatgcattgtctctaccaactgagttaa 2078246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 3176990 - 3177028
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  3176990 cttgcatatattatgcattgttcctaccaactgagttaa 3177028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 7464512 - 7464546
Alignment:
Q  139 catatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||| |||||||||||||||||||    
T  7464512 catatattatgcattgtccctaccaactgagttaa 7464546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 7738713 - 7738675
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  7738713 cttgcatattttatgcattgtccctaccaactgagttaa 7738675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 7974529 - 7974563
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  7974529 cttgcatatattatgcattatccataccaactgag 7974563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 12976619 - 12976657
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  12976619 cttgcatatattatgcattgtccctatcaactgagttaa 12976657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 14771375 - 14771337
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  14771375 cttgcatatattatgcattatgcctactaactgagttaa 14771337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 18870742 - 18870776
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  18870742 cttgcatatattatgcattgtccctaccaactgag 18870776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 19468495 - 19468457
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  19468495 cttgcatatattatgcattgtccataccaactgagttaa 19468457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 21914088 - 21914126
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  21914088 cttgcatatattatgcattgtccttaccaactgagttaa 21914126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 24145442 - 24145404
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  24145442 cttgtatatattatgcattgtccctaccaactgagttaa 24145404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 38130976 - 38131014
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  38130976 cttgcatatattatgcattgtccataccaactgagttaa 38131014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 42401476 - 42401438
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  42401476 cttgcatatactatgcattgtccctaccaactgagttaa 42401438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 45431992 - 45431958
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  45431992 cttgcatatattatgcattgtccctaccaactgag 45431958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 46226094 - 46226132
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  46226094 cttgcatatattatgcattgtccctaccaattgagttaa 46226132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 48315041 - 48315075
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  48315041 cttgcatatattatgcattatccttaccaactgag 48315075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 48511294 - 48511260
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  48511294 cttgcatatattatgcattgtccctaccaactgag 48511260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 52992082 - 52992120
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  52992082 cttgcataaattatgcaatatccctaccaactgagttaa 52992120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 53633638 - 53633672
Alignment:
Q  139 catatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||||||    
T  53633638 catatattatgcattatccttaccaactgagttaa 53633672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 1757687 - 1757724
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||| | |||||||||||||||||    
T  1757687 ttgcatatattatgcattgttcctaccaactgagttaa 1757724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 2662136 - 2662083
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaatattatgaggactat 188  Q
    ||||||||||||||||||| ||  ||||||||||| |||  |||||||||||||    
T  2662136 cttgcatatattatgcattgtctttaccaactgagctaaacttatgaggactat 2662083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 7617705 - 7617738
Alignment:
Q  140 atatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||| |||||||||||||||||||||    
T  7617705 atatattatgcaatatccctaccaactgagttaa 7617738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 8113576 - 8113613
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  8113576 gatcttgcatatattatgcattgtccttaccaactgag 8113613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 19126592 - 19126555
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  19126592 ttgcatatattatgcattatccttactaactgagttaa 19126555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 19883134 - 19883093
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||| ||||||||||||| |||||||| ||||||    
T  19883134 gatcttgcatattttatgcattatccataccaactaagttaa 19883093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 36431852 - 36431819
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||| ||||||||||||||||||||    
T  36431852 ttgcatatattatacattatccctaccaactgag 36431819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 37921016 - 37921049
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||||| ||||||||    
T  37921016 ttgcatatattatgcattatccctatcaactgag 37921049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 38094635 - 38094672
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  38094635 ttgcatatattttgcattatccttaccaactgagttaa 38094672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 39216398 - 39216361
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| || ||||||||||||    
T  39216398 gatcttgcatatattatgcattttctctaccaactgag 39216361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 51469828 - 51469861
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactga 168  Q
    ||||||||||||||||||| ||||||||||||||    
T  51469828 cttgcatatattatgcattgtccctaccaactga 51469861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 759612 - 759644
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactga 168  Q
    |||||||||||||||||| ||||||||||||||    
T  759612 ttgcatatattatgcattgtccctaccaactga 759644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 4200610 - 4200646
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  4200610 tgcatataatatgcaatatccctaccaactgagttaa 4200646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 11436549 - 11436513
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  11436549 tgcatataatatgcaatatccctaccaactgagttaa 11436513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 22486729 - 22486689
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  22486729 atcttgcatatattatgcattgttcttaccaactgagttaa 22486689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 44364066 - 44364030
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  44364066 tgcatataatatgcaatatccctaccaactgagttaa 44364030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 48234472 - 48234508
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  48234472 tgcatatattatgcattgtccccaccaactgagttaa 48234508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 52309135 - 52309171
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  52309135 tgcatatagtatgcaatatccctaccaactgagttaa 52309171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 52974078 - 52974114
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  52974078 tgcatataatatgcaatatccctaccaactgagttaa 52974114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 53432762 - 53432798
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  53432762 tgcatataatatgcaatatccctaccaactgagttaa 53432798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 55066619 - 55066651
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||| |||||||||||    
T  55066619 tgcatatattatgcattatccgtaccaactgag 55066651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 11017220 - 11017186
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||||||||||||||||    
T  11017220 cttgcatatattatgcattatccctaccaactgag 11017186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 11720938 - 11720900
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  11720938 cttgcatatattatgcattgtccctaccaactgagttaa 11720900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 20258589 - 20258551
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  20258589 cttgcatatattatgcattatccataccaactgagttaa 20258551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 33654792 - 33654754
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  33654792 cttgcatatattatgcattgtccctaccaactgagttaa 33654754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 2642781 - 2642818
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  2642781 ttgcatatattatgcattatccctaccaactaagttaa 2642818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 17046381 - 17046340
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  17046381 gatcttgcatatattatgcattgtccataccaactgagttaa 17046340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 31198752 - 31198715
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| |||||||||||||||    
T  31198752 ttgcatatattatgcattatccttaccaactgagttaa 31198715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 3389209 - 3389169
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagtta 172  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  3389209 gatcttgcatatattatgcattgtccataccaactgagtta 3389169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 40091525 - 40091486
Alignment:
Q  134 tcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  40091525 tcttgcatataatatgcaatatccctaccaactgagttaa 40091486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 41417809 - 41417774
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactga 168  Q
    |||||||||||||||| |||||||||||||||||||    
T  41417809 atcttgcatatattatacattatccctaccaactga 41417774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 5107262 - 5107300
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  5107262 cttgcatatattatgcattattcataccaactgagttaa 5107300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 5974242 - 5974280
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  5974242 cttgcatatattatgcattatccctatcgactgagttaa 5974280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 6489051 - 6489017
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  6489051 cttgcatatattatgcattgtccctaccaactgag 6489017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 11647241 - 11647203
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  11647241 cttgcatatattatgcattgtccttaccaactgagttaa 11647203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 13044483 - 13044449
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||| |||||||||||||    
T  13044483 cttgcatatattatgcattattcctaccaactgag 13044449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 13114481 - 13114447
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||| |||||||||||||    
T  13114481 cttgcatatattatgcattattcctaccaactgag 13114447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 15889455 - 15889421
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  15889455 cttgcatatattatgcattgtccctaccaactgag 15889421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 19068456 - 19068490
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  19068456 cttgcatatattatgcattatccataccaactgag 19068490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 20211324 - 20211290
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||| |||||||||||||||||||    
T  20211324 cttgcatatattatgtattatccctaccaactgag 20211290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 20370147 - 20370181
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    |||| ||||||||||||||||||||||||||||||    
T  20370147 cttgtatatattatgcattatccctaccaactgag 20370181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 22498986 - 22498948
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  22498986 cttgcatatattatgcattgtccttaccaactgagttaa 22498948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 31545915 - 31545877
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  31545915 cttgcatatattatgcattatcctaaccaactgagttaa 31545877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 31877976 - 31877934
Alignment:
Q  131 tgatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||    
T  31877976 tgatcttgcatatattatgcattgtccataccaagtgagttaa 31877934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 34436895 - 34436861
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  34436895 cttgcatatattatgcattgtccctaccaactgag 34436861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 38495186 - 38495148
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  38495186 cttgcatattttatgcattatccataccaactgagttaa 38495148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 41650956 - 41650994
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  41650956 cttgcatatattatgcattgtccataccaactgagttaa 41650994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 43108613 - 43108575
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  43108613 cttgcatatattatgcattgtccttaccaactgagttaa 43108575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 5485229 - 5485196
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||| |||||||||||||||    
T  5485229 ttgcatatattatgcattgtccctaccaactgag 5485196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 16094104 - 16094067
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  16094104 gatcttacatatattatgcattatccctatcaactgag 16094067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 17862022 - 17861989
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||| |||||||||||||||    
T  17862022 ttgcatatattatgcattgtccctaccaactgag 17861989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 40056608 - 40056645
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  40056608 ttgcatatattatgcattgtccttaccaactgagttaa 40056645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 546847 - 546811
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  546847 tgcatataatatgcaatatccctaccaactgagttaa 546811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 2363014 - 2362978
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  2363014 tgcatataatatgcaatatccctaccaactgagttaa 2362978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 3156580 - 3156540
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  3156580 atcttacatattttatgcattatccataccaactgagttaa 3156540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 5900337 - 5900301
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  5900337 tgcatataatatgcaatatccctaccaactgagttaa 5900301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 6237734 - 6237774
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| ||||| |||||| ||||||    
T  6237734 atcttgcatatattatgcattgtccctgccaacttagttaa 6237774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 6414113 - 6414077
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  6414113 tgcatataatatgcaatatccctaccaactgagttaa 6414077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 10241770 - 10241734
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  10241770 tgcatataatatgcaatatccctaccaactgagttaa 10241734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 19985545 - 19985513
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||| |||||||||||||||||    
T  19985545 tgcatatattatgcaatatccctaccaactgag 19985513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 20206562 - 20206526
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactga 168  Q
    |||||||||||||||||||||| || |||||||||||    
T  20206562 gatcttgcatatattatgcattgtctctaccaactga 20206526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 33736039 - 33736075
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  33736039 tgcatataatatgcaatatccctaccaactgagttaa 33736075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 33952799 - 33952831
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||| ||||||||||||||||||||    
T  33952799 tgcatatattattcattatccctaccaactgag 33952831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 2726434 - 2726485
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaatattatgaggact 186  Q
    ||||||||||||||||||| ||| |||||||||||||||  ||| |||||||    
T  2726434 cttgcatatattatgcattgtccataccaactgagttaagtttacgaggact 2726485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 331903 - 331941
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  331903 cttgcatatattatgcattgtctctaccaactgagttaa 331941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 9977101 - 9977063
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  9977101 cttgcatatattatgcattatccataccaattgagttaa 9977063  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 10780124 - 10780158
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||| |||||||||||||||    
T  10780124 cttgcatatattatgcattgtccctaccaactgag 10780158  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 13732859 - 13732821
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  13732859 cttgcatataatatgcaatatccctaccaactgagttaa 13732821  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 16403975 - 16404013
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| || |||||||||||||    
T  16403975 cttgcatatattatgcattatctctgccaactgagttaa 16404013  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 30639443 - 30639477
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgag 169  Q
    ||||||||||||||||||||| |||||||||||||    
T  30639443 cttgcatatattatgcattattcctaccaactgag 30639477  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 31971573 - 31971535
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  31971573 cttgcatatattatgcattgtccttaccaactgagttaa 31971535  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 4922426 - 4922463
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  4922426 ttgcatatattatacattatccctaccaactaagttaa 4922463  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 8637454 - 8637487
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactga 168  Q
    ||||||||||||||||||| ||||||||||||||    
T  8637454 cttgcatatattatgcattgtccctaccaactga 8637487  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 32524438 - 32524475
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  32524438 ttgcatatattatgcattgtccctaccaattgagttaa 32524475  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 361208 - 361172
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  361208 tgcatataatatgcaatatccctaccaactgagttaa 361172  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 361796 - 361760
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  361796 tgcatatattatgcattgtccataccaactgagttaa 361760  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 3373396 - 3373436
Alignment:
Q  133 atcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| ||| || ||||||||||||    
T  3373396 atcttgcatatattatgcattgtccatatcaactgagttaa 3373436  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 8916491 - 8916527
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagtt 171  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  8916491 cttgcatatattatgtattgtccctaccaactgagtt 8916527  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 27094832 - 27094868
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  27094832 tgcatataatatgcaatatccctaccaactgagttaa 27094868  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 28222908 - 28222872
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  28222908 tgcatataatatgcaatatccctaccaactgagttaa 28222872  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 28237277 - 28237313
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  28237277 tgcatataatatgcaatatccctaccaactgagttaa 28237313  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 30938433 - 30938397
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||| | |||||||||||||||||||    
T  30938433 tgcatatattatgcaatgtccctaccaactgagttaa 30938397  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 31802098 - 31802062
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  31802098 tgcatataatatgcaatatccctaccaactgagttaa 31802062  T

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Target: scaffold1160 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 1729 - 1767
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  1729 cttgcatattttatgcattgtccctaccaactgagttaa 1767  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 25433 - 25395
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  25433 cttgcatatattatgcattgtccttaccaactgagttaa 25395  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 17788 - 17826
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  17788 cttgcatatattatgcattttccctaccaactaagttaa 17826  T

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Target: scaffold0126 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 34905 - 34943
Alignment:
Q  135 cttgcatatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  34905 cttgcatatattatgcattgtccttaccaactgagttaa 34943  T

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Target: scaffold0533 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 8865 - 8906
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||||||||||||||||| ||| |||||| ||||||||    
T  8865 gatcttgcatatattatgcattgtccttaccaattgagttaa 8906  T

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Target: scaffold0161 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 26737 - 26704
Alignment:
Q  140 atatattatgcattatccctaccaactgagttaa 173  Q
    ||||||||||||||||||||| ||||||||||||    
T  26737 atatattatgcattatccctaacaactgagttaa 26704  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 31169 - 31206
Alignment:
Q  132 gatcttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  31169 gatcttgcatatattatgcattgtccataccaactgag 31206  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 221031 - 221064
Alignment:
Q  136 ttgcatatattatgcattatccctaccaactgag 169  Q
    |||||||||||||| |||||||||||||||||||    
T  221031 ttgcatatattatgtattatccctaccaactgag 221064  T

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Target: scaffold0690 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 3711 - 3675
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  3711 tgcatataatatgcaatatccctaccaactgagttaa 3675  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 23406 - 23370
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  23406 tgcatataatatgcaatatccctaccaactgagttaa 23370  T

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Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 37439 - 37475
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  37439 tgcatataatatgcaatatccctaccaactgagttaa 37475  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 112153 - 112117
Alignment:
Q  137 tgcatatattatgcattatccctaccaactgagttaa 173  Q
    |||||||| |||||| |||||||||||||||||||||    
T  112153 tgcatataatatgcaatatccctaccaactgagttaa 112117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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