View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6989_low_2 (Length: 405)
Name: NF6989_low_2
Description: NF6989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6989_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 6621200 - 6620821
Alignment:
| Q |
16 |
tggtaatcaatctatcttgtttctttttgttcataaattcattcaatttttgcaataattctaagaaataaaaacatttatttggtatcgtggtaggttt |
115 |
Q |
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| T |
6621200 |
tggtaatcaatctatcttgtttctttttgttcataaattcattcaatttttgcaataattctaagaaataaaaacatttatttggtatcgtggtaggttt |
6621101 |
T |
|
| Q |
116 |
gtcaaaattacgatgaactattctgattttgcaagagctatatagattactgtgaatgtgcaaaaactacgtcgtataacttttgcaaaatcaagacggc |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
6621100 |
gtcaaaattacgatgaattattctgattttgcaagagctatatagattaccgtgattgtgcaaaaactacattgtataacttttgcaaaatcaagacggc |
6621001 |
T |
|
| Q |
216 |
ttactatgatttcaatacatccactgtgataccaaacatatattaattgtctgactttgnnnnnnnattatgggatgatgcagttgttcttgctgttatg |
315 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6621000 |
ttcctatgatttcaatacatccactgtgacaccaaacatatattaattgtctgactttg-ttttttattatgggatgatgcagttgttcttgctgttatg |
6620902 |
T |
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| Q |
316 |
actgtacacaaggtttctttgacttcttgtgttgcagcttctggtgaattctttgaattagatttcaatttcaagtattat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6620901 |
actgtacacaaggtttctttgacttcttgtgttgcagcttctggtgaattctttgaattagatttcaatttcaagtattat |
6620821 |
T |
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