View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6989_low_3 (Length: 377)
Name: NF6989_low_3
Description: NF6989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6989_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 66 - 362
Target Start/End: Complemental strand, 30997645 - 30997352
Alignment:
| Q |
66 |
caatttcaatggttgacttatgcaaaatcaaattaagttggaaagattttcctaacgcttcagtagatcggtatgtttatgaacatgcgtcactagataa |
165 |
Q |
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| T |
30997645 |
caatttcaatggttgacttatgcaaaatcaaattaagttggaaagattttcctaacgcttcagtagatcgatatgtttatcaacatgcgtcattagataa |
30997546 |
T |
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| Q |
166 |
ggttgttttgattccacattcatgcttcatcgatgnnnnnnnnnccacatttttgataagttgtagtgaaagtagtcattttgagattatttattgtgaa |
265 |
Q |
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| T |
30997545 |
ggttgctttgattccacattcatgcttcatcgatgaaaaagaaaccacatttttgataagttgtagtgaaagtagtcattttgagattatttattgtgaa |
30997446 |
T |
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| Q |
266 |
ggaatgatgcaatatttctgtactttgataatctgaaaaaggctacattagaaggtcatcatgaagtgaaatatgtttattttatgcttttgatgtc |
362 |
Q |
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| T |
30997445 |
ggaatgatgcaatatttctgtactttgataatctgaaaaaggctacat---agggtcatcatgaagtgaaatatgtttattctatgcttttgatgtc |
30997352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 31001617 - 31001487
Alignment:
| Q |
70 |
ttcaatggttgacttatgcaaaatcaaattaagttggaaagattttcctaacgcttcagtagatcggtatgtttatgaacatgcgtcactagataaggtt |
169 |
Q |
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| T |
31001617 |
ttcaatggttgatttatgcaaaatcaaattgagttgcaaagattttcttaacattttagcagatctttacgtttatcaacatgcgtcactatataagttt |
31001518 |
T |
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| Q |
170 |
gttttgattccacattcatgcttcatcgatg |
200 |
Q |
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| T |
31001517 |
cctttgattccacattcatggttcaccgatg |
31001487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 31001376 - 31001311
Alignment:
| Q |
295 |
aatctgaaaaaggctacattagaaggtcatcatgaagtgaaatatgtttattttatgcttttgatg |
360 |
Q |
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| T |
31001376 |
aatctgaaaaaggctttattagagggtcatcatgaagctaaatatgtttattctatgcttttgatg |
31001311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 34304858 - 34304929
Alignment:
| Q |
289 |
tttgataatctgaaaaaggctacattagaaggtcatcatgaagtgaaatatgtttattttatgcttttgatg |
360 |
Q |
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| T |
34304858 |
tttgacaatctgaaaaatgctgcattagggggtcatcatgaagctaaatatgtatattctatgcttttgatg |
34304929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 14572989 - 14573060
Alignment:
| Q |
289 |
tttgataatctgaaaaaggctacattagaaggtcatcatgaagtgaaatatgtttattttatgcttttgatg |
360 |
Q |
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| T |
14572989 |
tttgagaatttgaagaaggctgcattagagggtcatcatgatgcgaaatatgtttattctatgcttttgatg |
14573060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 50936207 - 50936161
Alignment:
| Q |
248 |
gagattatttattgtgaaggaatgatgcaatatttctgtactttgat |
294 |
Q |
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| T |
50936207 |
gagattatttatcgtgaaggaatggtgcaatatttcagtactttgat |
50936161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 49666181 - 49666227
Alignment:
| Q |
248 |
gagattatttattgtgaaggaatgatgcaatatttctgtactttgat |
294 |
Q |
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| T |
49666181 |
gagattacttatcgtgaaggaatggtgcaatatttcagtactttgat |
49666227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 49666266 - 49666312
Alignment:
| Q |
314 |
tagaaggtcatcatgaagtgaaatatgtttattttatgcttttgatg |
360 |
Q |
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| T |
49666266 |
tagagggtcatcatgaagccaaatatgtttattctatgcttttgatg |
49666312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 50936122 - 50936076
Alignment:
| Q |
314 |
tagaaggtcatcatgaagtgaaatatgtttattttatgcttttgatg |
360 |
Q |
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| T |
50936122 |
tagagggtcatcatgaagccaaatatgtttattctatgcttttgatg |
50936076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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