View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6989_low_4 (Length: 266)
Name: NF6989_low_4
Description: NF6989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6989_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 15123078 - 15123307
Alignment:
| Q |
18 |
cacgaacgcaggcaagttgccaccaccaaacaaagagtcccattgtccacttaatgctgacacaatcatctgaaagtgcgtgtatattcataaataacaa |
117 |
Q |
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| T |
15123078 |
cacgaacgcaggtaagttgccaccaccaaacaaagagtcccattgtccacttaatgctgacacgatcatctgaaaatgcgtgtatattcataaataacaa |
15123177 |
T |
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| Q |
118 |
ataaagaaatgacatgacaatctcaaaagtacaacttatacgataaaagatcataaagacctttgctatgtaggtgcacgagttcagacccgtagtgttt |
217 |
Q |
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| T |
15123178 |
ataaagaaatgatatgacaatctcaaaagtacaacttatacgataaaagatcataaagacctttgctatgtaggttcacgagttcagacccgtagtgttt |
15123277 |
T |
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| Q |
218 |
catttttcaacatttactgtgtgtgaattt |
247 |
Q |
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| T |
15123278 |
catttttcaacatttactgtgtgtgaattt |
15123307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 55078764 - 55078695
Alignment:
| Q |
22 |
aacgcaggcaagttgccaccaccaaacaaagagtcccattgtccacttaatgctgacacaatcatctgaa |
91 |
Q |
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| T |
55078764 |
aacgccggcaagttgccaccaccaaacaaagcatcccacggtccacttaatgacgatactatcatctgaa |
55078695 |
T |
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