View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6990_high_1 (Length: 592)
Name: NF6990_high_1
Description: NF6990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6990_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 13 - 571
Target Start/End: Complemental strand, 39783735 - 39783177
Alignment:
| Q |
13 |
aacctgtgtatgaaggtaaacttgggacaaagaaggttcaaaactagttagcctctatagaaactaaattgatcattcatggagaagcttgttaggtcac |
112 |
Q |
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| T |
39783735 |
aacctgtgtatgaaggtaaacttgggacaaagaaggttcaaaactagttagcctctatagaaactaaattgatcattgatggagaagcttgttaggtcat |
39783636 |
T |
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| Q |
113 |
gtgacaaagaatacatgaggatggccatgttaaagcatgaagaaactttcaaacaacaggtacttctatatctattcctccacgttattctttctataag |
212 |
Q |
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| T |
39783635 |
gtgacaaagaatacatgaggatggccatgttaaagcatgaagaaactttcaaacaacaggtacttctatatctattcctccacgttattctttctataag |
39783536 |
T |
|
| Q |
213 |
tattagtagttcaaggtatttgatgtctccgttactgatattgaagttgcatatgtctttgctataacttatactgaccaatgcagcttcaatcatagtc |
312 |
Q |
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| T |
39783535 |
tattagtagttcaaggtatttgatgtctccattactgatattgaagttgcatatgtctttgctataacttatactgaccaatgcagcttcaatcatagtc |
39783436 |
T |
|
| Q |
313 |
aaaaactcatagacatcnnnnnnnttgatgtcacgaccaatattgaagctgcatcggccatttgatgtctatgcgagtttgtgactatgattgaagttgc |
412 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39783435 |
aaaaactcatagacatcaaaaaaattgatgtcacgaccaatattgaagctgcatcggccatttgatgtctatgcgagtctgtgactatgattgaagttgc |
39783336 |
T |
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| Q |
413 |
atcagtcgttcttgaatgcacactggcaaacatagaacnnnnnnnaaaaccatacgtcaattgagtgttgcgagaattttctttcaggtatacgagcttc |
512 |
Q |
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| T |
39783335 |
atcagtcgttcttgaatgcacactggcaaacatagaactttttttaaaaccatacgtcaattgagtgttgcgagaattttctttcaggtatacgagcttc |
39783236 |
T |
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| Q |
513 |
atcgtttgtatcgaatacaaaagatactgatgcaaaatatggaggcaagaagaggagtt |
571 |
Q |
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| T |
39783235 |
atcggttgtatcgaatacaaaagatactgatgcaaaatatggaggcaagaagaggagtt |
39783177 |
T |
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