View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6990_high_2 (Length: 396)

Name: NF6990_high_2
Description: NF6990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6990_high_2
NF6990_high_2
[»] chr3 (13 HSPs)
chr3 (148-396)||(47001734-47001982)
chr3 (148-396)||(46998042-46998290)
chr3 (151-389)||(46995801-46996039)
chr3 (148-396)||(46974979-46975227)
chr3 (151-396)||(46980966-46981211)
chr3 (10-149)||(46981185-46981330)
chr3 (12-148)||(46996014-46996144)
chr3 (54-148)||(46998262-46998356)
chr3 (9-149)||(46975198-46975344)
chr3 (247-396)||(46958730-46958879)
chr3 (313-396)||(46955874-46955957)
chr3 (97-148)||(47001954-47002005)
chr3 (318-392)||(46951541-46951615)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 47001982 - 47001734
Alignment:
Q  148 tctgaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattc 247  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  47001982 tctgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcgaggagctaaatttattcttgcaactttagatatcaccgtcaatgttattc 47001883  T
Q  248 tctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcagagcagttaaccaagatgttcacaccatgcctttgttgtctattcaagt 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  47001882 tctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccacagagcagttaaccatgatggtcacaccatgtctttgttgtctattcaagt 47001783  T
Q  348 cactgaattattggatggtgttttcataggttgttccatgaatcattgt 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47001782 cactgaattattggatggtgttttcataggttgttccatgaatcattgt 47001734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 46998290 - 46998042
Alignment:
Q  148 tctgaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattc 247  Q
    |||||||  ||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||    
T  46998290 tctgaagaccctcatttttacactgtttttgttgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatatcaccatcaatgatattc 46998191  T
Q  248 tctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcagagcagttaaccaagatgttcacaccatgcctttgttgtctattcaagt 347  Q
    |||||||||||||||| ||||| || ||| | || ||||||||||||| ||||||||| ||||| ||||  ||||||||| |||||||||| ||||||||    
T  46998190 tctcacctgttgatgtgccacctattgttcattcattctttgaccaccacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagt 46998091  T
Q  348 cactgaattattggatggtgttttcataggttgttccatgaatcattgt 396  Q
     ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  46998090 tactgaattattggatagtgtttttataggttgttccatgaatcattgt 46998042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 151 - 389
Target Start/End: Complemental strand, 46996039 - 46995801
Alignment:
Q  151 gaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattctct 250  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  46996039 gaagatcctcattcttacactgtttttgtcgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatattaccatcaatgatattctct 46995940  T
Q  251 cacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcagagcagttaaccaagatgttcacaccatgcctttgttgtctattcaagtcac 350  Q
    ||||  |||||||||||||||| ||| | || ||||||||||| | ||||||||| ||||| ||||  ||||||||| |||||||||| |||||||||||    
T  46995939 caccaattgatgtcccacccattgttcattcattctttgaccatcacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcac 46995840  T
Q  351 tgaattattggatggtgttttcataggttgttccatgaa 389  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  46995839 tgaattattagacggtgttttcataggttgttccatgaa 46995801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 46975227 - 46974979
Alignment:
Q  148 tctgaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattc 247  Q
    |||||||  |||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||| |||||    
T  46975227 tctgaagaccctcattcttacactgttttcgttgattgcaaaaacagtcgcggagctagatttattcatgcaactttagatatcaccataaatgatattc 46975128  T
Q  248 tctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcagagcagttaaccaagatgttcacaccatgcctttgttgtctattcaagt 347  Q
    ||||||| ||||||||||||||||| ||  ||||||||||||| ||   || |||||| | ||| |||| ||| |||||| |||| ||  ||||||||||    
T  46975127 tctcaccagttgatgtcccacccattgtccaatcgttctttgatcatgacaaagcagtcagccatgatggtcataccatgtctttattaactattcaagt 46975028  T
Q  348 cactgaattattggatggtgttttcataggttgttccatgaatcattgt 396  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46975027 aactgaattattggatggtgtttttataggttgttccatgaatcattgt 46974979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 151 - 396
Target Start/End: Complemental strand, 46981211 - 46980966
Alignment:
Q  151 gaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattctct 250  Q
    |||| |||| |||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |||| ||| |||     
T  46981211 gaagatcctgattcttacactgttttcgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttagatatcaccataaatgatatcctca 46981112  T
Q  251 cacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcagagcagttaaccaagatgttcacaccatgcctttgttgtctattcaagtcac 350  Q
    | ||  |||||||||||||||| ||  | ||||||||||| ||   || |||||| ||||| |||| ||| |||||| ||||||||||||||||||||||    
T  46981111 cccccattgatgtcccacccattgtccattcgttctttgatcatgacaaagcagtcaaccatgatggtcataccatgtctttgttgtctattcaagtcac 46981012  T
Q  351 tgaattattggatggtgttttcataggttgttccatgaatcattgt 396  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||    
T  46981011 tgaattagtagatggtgttttcattggttgttccatgaatcattgt 46980966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 46981330 - 46981185
Alignment:
Q  10 catcatcactaaaccaacaacatttcattgagaatctgatggaaaaac------actccctttccctcacacttttccatttccatcccctctcaggtct 103  Q
    |||||||||||||||||||||||||||| ||||| ||| |||| ||||      |||||||||||||||| |||||||||||| |||||||||||||||     
T  46981330 catcatcactaaaccaacaacatttcatagagaacctggtggagaaactgaaacactccctttccctcacgcttttccatttctatcccctctcaggtcg 46981231  T
Q  104 tcttgttactcaaaaatctgaagatcctcattcttacactattttc 149  Q
    |||||||||| ||||||| ||||||||| ||||||||||| |||||    
T  46981230 tcttgttactaaaaaatccgaagatcctgattcttacactgttttc 46981185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 46996144 - 46996014
Alignment:
Q  12 tcatcactaaaccaacaacatttcattgagaatctgatggaaaaacactccctttccctcacacttttccatttccatcccctctcaggtcttcttgtta 111  Q
    ||||||||||||||||| ||||||||||| || || |      |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  46996144 tcatcactaaaccaacagcatttcattgacaaactca------aacactccctttccctcacacttttccatttctatcccctctcaggtcgtcttgtta 46996051  T
Q  112 ctcaaaaatctgaagatcctcattcttacactatttt 148  Q
    || ||||||| ||||||||||||||||||||| ||||    
T  46996050 ctaaaaaatccgaagatcctcattcttacactgtttt 46996014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 46998356 - 46998262
Alignment:
Q  54 aaacactccctttccctcacacttttccatttccatcccctctcaggtcttcttgttactcaaaaatctgaagatcctcattcttacactatttt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| ||||||| ||||    
T  46998356 aaacactccctttccctcacacttttccatttccatcccctctcaggccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttt 46998262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 46975344 - 46975198
Alignment:
Q  9 acatcatcactaaaccaacaacatttcattgagaatctgatggaaaaac------actccctttccctcacacttttccatttccatcccctctcaggtc 102  Q
    ||||||||||||||||||||||| ||||||||||| ||  |||| ||||      |||| ||||| ||||||||||| ||||   ||||||| || ||||    
T  46975344 acatcatcactaaaccaacaacacttcattgagaacctagtggacaaactcaaacactctctttctctcacactttttcattattatcccctgtctggtc 46975245  T
Q  103 ttcttgttactcaaaaatctgaagatcctcattcttacactattttc 149  Q
     |||||||||| ||||||||||||| ||||||||||||||| |||||    
T  46975244 gtcttgttactaaaaaatctgaagaccctcattcttacactgttttc 46975198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 396
Target Start/End: Complemental strand, 46958879 - 46958730
Alignment:
Q  247 ctctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccgcagagcagttaaccaagatgttcacaccatgcctttgttgtctattcaag 346  Q
    ||||||||||||||||| || || || ||| | || |||||||| | |  || |||| | ||||| || | |||||||||||| ||||| || |||||||    
T  46958879 ctctcacctgttgatgttcctccaattgttgagtcattctttgatctcaacaaagcaatcaaccacgacggtcacaccatgccattgttatcaattcaag 46958780  T
Q  347 tcactgaattattggatggtgttttcataggttgttccatgaatcattgt 396  Q
    |||| ||  || |||||||||||||||||||||||||| |||||||||||    
T  46958779 tcacagagctagtggatggtgttttcataggttgttccctgaatcattgt 46958730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 396
Target Start/End: Complemental strand, 46955957 - 46955874
Alignment:
Q  313 gatgttcacaccatgcctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcattgt 396  Q
    |||| |||||||||||| ||| | || ||||||||||| ||||||  |||||||||||||||||||||||||||||| ||||||    
T  46955957 gatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgt 46955874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 47002005 - 47001954
Alignment:
Q  97 caggtcttcttgttactcaaaaatctgaagatcctcattcttacactatttt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47002005 caggtcttcttgttactcaaaaatctgaagatcctcattcttacactgtttt 47001954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 46951615 - 46951541
Alignment:
Q  318 tcacaccatgcctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatca 392  Q
    |||||||||||| ||||| || || |||||||||||  || | ||||||||||||||||||||||| ||||||||    
T  46951615 tcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatca 46951541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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