View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6991_high_10 (Length: 351)
Name: NF6991_high_10
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 43673111 - 43672791
Alignment:
| Q |
14 |
atatcaaacagcagagttgaagatcttaataaagaaccctaatgaaatcaaaactgatgaagttaataataacattgtttctcatcaaatactatactaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43673111 |
atatcaaacagcagagttgaagatcttaataaagaaccctaatgaaatcaaaactgatgaagttaataataacactgtttctcatcaaatactatactaa |
43673012 |
T |
|
| Q |
114 |
agtctaaaccaccaaatatcgacacaacatctgtcatactcttttaagtttcttccctaccaaactcatatggactaaatagtgataaaaataaagagtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43673011 |
agtctaaaccaccaaatatcgacacaacatctgtcatactcttttaagtttcttccctaccaaactcatatggactaaatagtgataaaaataaagagtg |
43672912 |
T |
|
| Q |
214 |
aggaaggaatgaaggaccatatattatgaaaccaagtcaaccataaaaatggatccgtaagttataagaaactatcaaataaaatggaatcttgcctttg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43672911 |
aggaaggaatgaaggaccatatattatgaaaccaagtcaaccataaaaatggatccgtaagttataagaaactatcaaataaaatggaatcttgcctttg |
43672812 |
T |
|
| Q |
314 |
caattcatgattatttaattc |
334 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43672811 |
caattcatgattatttaattc |
43672791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University