View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_high_12 (Length: 320)
Name: NF6991_high_12
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 46676687 - 46676976
Alignment:
| Q |
18 |
acattcctcataaaaatcacatctttaaacaaaacatatatacatatatacaaacttcaacttaattcccaaacatatatttgatggagagaacacaatc |
117 |
Q |
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| T |
46676687 |
acattcctcataacaatcacatcttcaaacaaaacatatatacatatatacaaacttcaacttaattcccaaacatatatttgatggagagaacacaatc |
46676786 |
T |
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| Q |
118 |
atcacttctacaaattcagcctcctacctatgggaacttagtgactattctaagcatcgacggtggtggtattaggggaattattccggcaactattctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46676787 |
atcacttctacaaattcagcctcctacctatgggaacttagtgactattctaagcatcgacggtggtggtattaggggaattattccggcaactattctc |
46676886 |
T |
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| Q |
218 |
gagttccttgaatcacaacttcaagaattagacggtgaatctgctaggctcgcagattactttgatgtgattacaggaactagcacaggt |
307 |
Q |
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| T |
46676887 |
gagttccttgaatcacaacttcaagaattagacggtgaatctgctaggctcgcagattactttgatgtgattacaggaactagcacaggt |
46676976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 68 - 307
Target Start/End: Original strand, 46680719 - 46680958
Alignment:
| Q |
68 |
caaacttcaacttaattcccaaacatatatttgatggagagaacacaatcatcacttctacaaattcagcctcctacctatgggaacttagtgactattc |
167 |
Q |
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| T |
46680719 |
caaacttcaacttaattcccaaacatatatttgatggagagaacacaatcatcacttctacagattcagcctcctacctatggcaacttagtaactatac |
46680818 |
T |
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| Q |
168 |
taagcatcgacggtggtggtattaggggaattattccggcaactattctcgagttccttgaatcacaacttcaagaattagacggtgaatctgctaggct |
267 |
Q |
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| T |
46680819 |
taagcattgatggtggcggcattaggggaattattcccgcaactatcctcgagttccttgaatcgcaacttcaagaattagacggtgaatctgctaggct |
46680918 |
T |
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| Q |
268 |
cgcagattactttgatgtgattacaggaactagcacaggt |
307 |
Q |
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| T |
46680919 |
tgcagattactttgatgtgattacaggaacaagcacaggt |
46680958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 2649574 - 2649527
Alignment:
| Q |
260 |
gctaggctcgcagattactttgatgtgattacaggaactagcacaggt |
307 |
Q |
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|||||||| ||| ||||||||||||||||||||||||| ||||||||| |
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| T |
2649574 |
gctaggcttgcaaattactttgatgtgattacaggaacaagcacaggt |
2649527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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