View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_high_16 (Length: 286)
Name: NF6991_high_16
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 22050025 - 22049767
Alignment:
| Q |
19 |
ggaagggactggaatttgtttacactattgaacaaatgtaaggaaggagatgttttgaagtttcgatttgtcaatcataatcactcaaatcttataatgg |
118 |
Q |
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| T |
22050025 |
ggaagggactggaatttgtttacactattgaacaaatgtaaggaaggagatgttttgaagtttcgatttgtcaatcataatcactcaaatcttataatgg |
22049926 |
T |
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| Q |
119 |
ttgcaaaaatgtgatttggttaggaatctatgtcaattagtatatttgtgttgaagtacaataatatgttatctatcatataagtttagatctatctacc |
218 |
Q |
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| T |
22049925 |
ttgcaaaaatgtgatttggttatgaatctatgtcaattagtatctttgtgttgaagtgcaataatatgttatctgtcatataagtttggatctatctacc |
22049826 |
T |
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| Q |
219 |
attatgtctgtaacaaatctcatgtcatgatcaattatatgtaatttgtttagtattat |
277 |
Q |
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| T |
22049825 |
attatgtctgtaacaaatctcatgtcatcatcaattatatgtaatttgtttagtattat |
22049767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 22059305 - 22059257
Alignment:
| Q |
67 |
gatgttttgaagtttcgatttgtcaatcataatcactcaaatcttataa |
115 |
Q |
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|||||||||||||| ||||||||| ||||||||| |||||||| |||| |
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| T |
22059305 |
gatgttttgaagttccgatttgtcgatcataatcgttcaaatctaataa |
22059257 |
T |
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