View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_high_20 (Length: 244)
Name: NF6991_high_20
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 43911235 - 43911023
Alignment:
| Q |
17 |
cactttccatttcccttacctctctttcaaaaataattaattaacaataataccctgttgttgatgctgtacgaaaccacatccattgtggattcttgtc |
116 |
Q |
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| T |
43911235 |
cactttccatttcccttacctctctttcaaaaataattaattaacaataataccctgttgttgatgctgtccgaaaccacatccattgtggattcttgtc |
43911136 |
T |
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| Q |
117 |
tcggctacaaatattattattaaaaactctaacccaccacatcttgttacataagaacactgcaatctctttggnnnnnnnnnnnncaagctacaacatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
43911135 |
tcggctacaaatattattattaaaaactctaacccaccacatcttgttacataagaacactgcactctctttggttttttattgttcaagctacaacatc |
43911036 |
T |
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| Q |
217 |
aacctttttgatg |
229 |
Q |
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||||||||||||| |
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| T |
43911035 |
aacctttttgatg |
43911023 |
T |
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