View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_high_3 (Length: 420)
Name: NF6991_high_3
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 314 - 409
Target Start/End: Original strand, 39952493 - 39952588
Alignment:
| Q |
314 |
ctatgtgctgccttgtaaaaatcgaagaggcggtgtcagtgtaaaagtcggttcatgcatttgtcccttcatgttaattcgatgtttttggttctt |
409 |
Q |
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| T |
39952493 |
ctatgtgctgtcttgtaaaaatcgaagaggcggtgtcagtgtaaaagtcggttcatgcatttgtcccttcatgttaattcgatgtttttggttctt |
39952588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 39952289 - 39952403
Alignment:
| Q |
114 |
attcatagcttaacattgcaaagatcgtatcnnnnnnnnnnnnncttcatgttagtaccattcttgaagtttttatttaactgggtcaacgttttaaatc |
213 |
Q |
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| T |
39952289 |
attcatagcttaacattgcaaagatcgtatcttttttactttttcttcatgttagtaccattcttgaagtttttatttaactgggtcaacgttttaaatc |
39952388 |
T |
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| Q |
214 |
aaaaatatagaaaaa |
228 |
Q |
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| T |
39952389 |
aaaaatatagaaaaa |
39952403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 9546180 - 9546254
Alignment:
| Q |
14 |
tgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtaccttcttcaacggtttcagttct |
88 |
Q |
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| T |
9546180 |
tgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtaccttcttcaacggtttcagttct |
9546254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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