View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_high_4 (Length: 419)
Name: NF6991_high_4
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 397656 - 398051
Alignment:
| Q |
13 |
aatatacaatagaacatctagtctacattatttaaaggggtatgagtagtttatatcgagtaaataatatattgaacatttttatctatccaatataaaa |
112 |
Q |
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| T |
397656 |
aatagacaatagaacatctagtcttcattatttaaaggggtatgagtagtttatatcgagtaaataatatattgaacatttttatctatccaatataaaa |
397755 |
T |
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| Q |
113 |
cttat------gttaaacctttttgttggctttatttatctatcaacatttgacggtgaaccttgatctaacctataaattgtcctttatgtaaacaaat |
206 |
Q |
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| T |
397756 |
cttataacattgccacacctttttgttggcttcatttatctatcaacatttgatggtgagccttgatctaacctataaattatcctttatgtaaccgaat |
397855 |
T |
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| Q |
207 |
tgtcattgaaagtactaattgttaggacttaaccacaagaagtgtgtgactcagaagattaattcattcggtgagaaagtttgatgacttaaatattgta |
306 |
Q |
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| T |
397856 |
tgtcattgaaagtattaattgttaggacttaatcacaa-aagtgtgagactcaaaagattaattcattaaataaaaaagtttgatgacttaaatatcata |
397954 |
T |
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| Q |
307 |
tttaaaacttttatctagtcgatacgagatttctaataatatgcttata--nnnnnnnnncatgataacatgttcgatacatataagaccatcgatt |
401 |
Q |
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| T |
397955 |
ttgaaaacttttctctaaccaatacgagatttctaataatatacctatatcattttttttcatgataacatgttcaatacatataagaccattgatt |
398051 |
T |
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