View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6991_high_6 (Length: 400)

Name: NF6991_high_6
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6991_high_6
NF6991_high_6
[»] chr5 (16 HSPs)
chr5 (1-382)||(13453153-13453534)
chr5 (216-369)||(13425643-13425796)
chr5 (220-369)||(13418769-13418918)
chr5 (216-380)||(13446338-13446502)
chr5 (216-369)||(13412391-13412544)
chr5 (213-331)||(13448908-13449028)
chr5 (263-369)||(13411596-13411702)
chr5 (232-351)||(13372577-13372696)
chr5 (226-382)||(13389836-13389992)
chr5 (223-382)||(13386045-13386204)
chr5 (6-115)||(13425905-13426014)
chr5 (37-105)||(13385830-13385898)
chr5 (44-115)||(13419015-13419086)
chr5 (17-115)||(13446561-13446659)
chr5 (37-81)||(13389656-13389700)
chr5 (258-300)||(13378366-13378408)
[»] chr4 (2 HSPs)
chr4 (232-382)||(47600515-47600665)
chr4 (37-104)||(47600846-47600913)
[»] chr8 (2 HSPs)
chr8 (7-108)||(28431201-28431302)
chr8 (230-300)||(28431502-28431572)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 13453534 - 13453153
Alignment:
Q  1 gcggatcatcctctattaccgttgattggtttgctcaagtctcatggaaagcttgtaatggttggtgcacctgaaaagcctctagagcttcctgtttttc 100  Q
    ||||||||||| ||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13453534 gcggatcatccgctattacctctgattggtttactcaagtctcatggaaagcttgtaatggttggtgcacctgaaaagcctctagagcttcctgtttttc 13453435  T
Q  101 ctttacttgcaggtatataagcatttggaaaatatatatacttccatttccatatgatgctaaatatgcacttctaaatgtttaaattaaattatgaaca 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13453434 ctttacttgcaggtatataagcatttgaaaaatatatatacttccatttccatatgatgctaaatatgcacttctaaatgtttaaattaaattatgaaca 13453335  T
Q  201 tttaaacacacaagtatttcacattattggtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13453334 tttaaacacacaagtatttcacattattggtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgc 13453235  T
Q  301 ggcggaacacaatgtaaagcctgatattgagatcattcctattgattatgtcaacacagcgatggagcgccttcttaaagca 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13453234 ggcggaacacaatgtaaagcctgatattgagatcattcctattgattatgtcaacacagcgatggagcgccttcttaaagca 13453153  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 216 - 369
Target Start/End: Complemental strand, 13425796 - 13425643
Alignment:
Q  216 atttcacattattggtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgt 315  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  13425796 atttcacattatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggccgaacacaatgt 13425697  T
Q  316 aaagcctgatattgagatcattcctattgattatgtcaacacagcgatggagcg 369  Q
    ||  |||||||||||| |  ||||||||||||||||||||||||| ||||||||    
T  13425696 aacacctgatattgaggttgttcctattgattatgtcaacacagcaatggagcg 13425643  T

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Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 220 - 369
Target Start/End: Complemental strand, 13418918 - 13418769
Alignment:
Q  220 cacattattggtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgtaaag 319  Q
    ||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||| |||||||||| || ||||||||||||| |    
T  13418918 cacattatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagagtcaagaaatggttgattttgcagcagaacacaatgtaacg 13418819  T
Q  320 cctgatattgagatcattcctattgattatgtcaacacagcgatggagcg 369  Q
    |||||||||||| |  ||||||||||||||||||||||||| ||||||||    
T  13418818 cctgatattgaggttgttcctattgattatgtcaacacagcaatggagcg 13418769  T

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Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 216 - 380
Target Start/End: Complemental strand, 13446502 - 13446338
Alignment:
Q  216 atttcacattattggtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgt 315  Q
    ||||||||||||| ||||||||||||  | |||| |||||||| ||||||||||| || |||||||||||||||||||||||||| ||  ||||||||||    
T  13446502 atttcacattatttgtagggagaaagtcaatagctggaagtttaattggagggataaaagagactcaagaaatgattgattttgctgctaaacacaatgt 13446403  T
Q  316 aaagcctgatattgagatcattcctattgattatgtcaacacagcgatggagcgccttcttaaag 380  Q
    || |||||| |||||| |  |||||||||||||||||||||| || |||||||| ||| ||||||    
T  13446402 aacgcctgagattgaggttgttcctattgattatgtcaacaccgcaatggagcgtcttgttaaag 13446338  T

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Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 216 - 369
Target Start/End: Complemental strand, 13412544 - 13412391
Alignment:
Q  216 atttcacattattggtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgt 315  Q
    |||||| ||||||| |||||||||| ||| |||| ||||||    |||||||| | ||||||||||||||||||||| |||||||||| |||||||||||    
T  13412544 atttcatattattgatagggagaaaaatattagctggaagtcaagttggagggttaaaggagactcaagaaatgattaattttgcggcagaacacaatgt 13412445  T
Q  316 aaagcctgatattgagatcattcctattgattatgtcaacacagcgatggagcg 369  Q
    |||||| ||||| ||| |  |||| |||||||||||||||||||| ||| ||||    
T  13412444 aaagccggatatcgaggttgttccgattgattatgtcaacacagcaatgcagcg 13412391  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 13449028 - 13448908
Alignment:
Q  213 agtatttcacattattggtagggagaaagatagtagcaggaagtttgattggagggatca--aggagactcaagaaatgattgattttgcggcggaacac 310  Q
    ||||||| ||||||||||||||| |||||||||||||   |||||| ||||||| ||| |  | |||||||||||||||||||||||||| || ||||||    
T  13449028 agtattttacattattggtagggggaaagatagtagcttaaagtttaattggagagatgataaagagactcaagaaatgattgattttgcagcagaacac 13448929  T
Q  311 aatgtaaagcctgatattgag 331  Q
    |||||||||||||||| ||||    
T  13448928 aatgtaaagcctgatactgag 13448908  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 369
Target Start/End: Original strand, 13411596 - 13411702
Alignment:
Q  263 ggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgtaaagcctgatattgagatcattcctattgattatgtcaacacagcga 362  Q
    ||||| || ||||| |||||||| |||||||||||||| ||  ||||||||||| | |||||||||||  |||| ||||| ||||||||||||||||| |    
T  13411596 ggaggaatgaaggaaactcaagagatgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaa 13411695  T
Q  363 tggagcg 369  Q
    |||||||    
T  13411696 tggagcg 13411702  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 351
Target Start/End: Complemental strand, 13372696 - 13372577
Alignment:
Q  232 agggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgtaaagcctgatattgag 331  Q
    ||||||||||||| | |  || ||| ||||||||||||| |||||||| |||||||||||||||||||| ||  ||||  |||| || ||||||||||||    
T  13372696 agggagaaagataattggtgggagtatgattggagggataaaggagacacaagaaatgattgattttgcagccaaacatgatgtgaaacctgatattgag 13372597  T
Q  332 atcattcctattgattatgt 351  Q
     | ||||| || ||||||||    
T  13372596 gttattccaatagattatgt 13372577  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 382
Target Start/End: Original strand, 13389836 - 13389992
Alignment:
Q  226 attggtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgtaaagcctgat 325  Q
    ||||| |||||||||| | ||||| ||||||   |||||||| ||||||||||||||||| ||| |||| ||||| ||  ||||||  ||||| |||||     
T  13389836 attggcagggagaaagctggtagccggaagtaatattggaggcatcaaggagactcaagagatgcttgactttgctgctaaacacagcgtaaaacctgac 13389935  T
Q  326 attgagatcattcctattgattatgtcaacacagcgatggagcgccttcttaaagca 382  Q
    |||||  || ||||| | |||||||| |||||||| || ||||| || || ||||||    
T  13389936 attgaagtcgttcctgtggattatgttaacacagcaattgagcgactcctcaaagca 13389992  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 382
Target Start/End: Original strand, 13386045 - 13386204
Alignment:
Q  223 attattggtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgtaaagcct 322  Q
    |||||||| |||||||||| | ||||| ||||||   |||||| | || |||||||||||||| ||| |||| ||||| ||  ||||||||||||| |||    
T  13386045 attattggcagggagaaagctggtagctggaagtggaattggaagcattaaggagactcaagagatgcttgaatttgctgctaaacacaatgtaaaacct 13386144  T
Q  323 gatattgagatcattcctattgattatgtcaacacagcgatggagcgccttcttaaagca 382  Q
    || |||||  |  ||||| | |||||||| |||||||| || ||||| || || ||||||    
T  13386145 gacattgaagttgttcctgtggattatgttaacacagcaattgagcgactcctcaaagca 13386204  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 13426014 - 13425905
Alignment:
Q  6 tcatcctctattaccgttgattggtttgctcaagtctcatggaaagcttgtaatggttggtgcacctgaaaagcctctagagcttcctgtttttccttta 105  Q
    ||||||| | ||||| |||||||||||  | || ||| ||||||| ||||||||||||||||     | ||||||||||||||||||||| ||| |||||    
T  13426014 tcatcctatcttaccattgattggtttattgaaatctaatggaaaacttgtaatggttggtggggtggcaaagcctctagagcttcctgtattttcttta 13425915  T
Q  106 cttgcaggta 115  Q
    |||| |||||    
T  13425914 cttggaggta 13425905  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 13385830 - 13385898
Alignment:
Q  37 aagtctcatggaaagcttgtaatggttggtgcacctgaaaagcctctagagcttcctgtttttccttta 105  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||| ||| | || || |||||||||    
T  13385830 aagtctcatggaaaacttgtaatggttggtgtacctgacaagcctctggagatccccgtctttccttta 13385898  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 13419086 - 13419015
Alignment:
Q  44 atggaaagcttgtaatggttggtgcacctgaaaagcctctagagcttcctgtttttcctttacttgcaggta 115  Q
    ||||||| |||||||||||||||| |   | ||||||||||||||||||||| ||| ||||||||| |||||    
T  13419086 atggaaaacttgtaatggttggtggagtggcaaagcctctagagcttcctgtattttctttacttggaggta 13419015  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 13446659 - 13446561
Alignment:
Q  17 taccgttgattggtttgctcaagtctcatggaaagcttgtaatggttggtgcacctgaaaagcctctagagcttcctgtttttcctttacttgcaggta 115  Q
    |||| |||||||||||  | || ||| |||||||||| |||||||||||||||   | |||||||||||| |||||| | ||| ||||||||| |||||    
T  13446659 taccattgattggtttattgaaatctaatggaaagctggtaatggttggtgcagtagcaaagcctctagaacttcctatattttctttacttggaggta 13446561  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 13389656 - 13389700
Alignment:
Q  37 aagtctcatggaaagcttgtaatggttggtgcacctgaaaagcct 81  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||    
T  13389656 aagtctcatggaaaacttgtaatggttggtgtacctgacaagcct 13389700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 300
Target Start/End: Complemental strand, 13378408 - 13378366
Alignment:
Q  258 tgattggagggatcaaggagactcaagaaatgattgattttgc 300  Q
    ||||||||||||| ||||| || ||||||||||||||||||||    
T  13378408 tgattggagggatgaaggaaacacaagaaatgattgattttgc 13378366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 47600665 - 47600515
Alignment:
Q  232 agggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgtaaagcctgatattgag 331  Q
    |||||||||||||||||| ||||||   ||||||||||| |||||||||||||| ||| |||||||||| ||  ||||||||||||| |||   |||||     
T  47600665 agggagaaagatagtagctggaagtaatattggagggatgaaggagactcaagatatgcttgattttgctgctaaacacaatgtaaaacctaccattgaa 47600566  T
Q  332 atcattcctattgattatgtcaacacagcgatggagcgccttcttaaagca 382  Q
     |||| ||||| |||||||| ||||| || |||||||| || || ||||||    
T  47600565 gtcatccctatggattatgttaacactgcaatggagcgactcctcaaagca 47600515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 47600913 - 47600846
Alignment:
Q  37 aagtctcatggaaagcttgtaatggttggtgcacctgaaaagcctctagagcttcctgtttttccttt 104  Q
    |||||||||||||| ||||||||||||||||| || |  |||||||| ||||| ||||| ||| ||||    
T  47600913 aagtctcatggaaaacttgtaatggttggtgctccagcgaagcctctggagctccctgtctttacttt 47600846  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 28431201 - 28431302
Alignment:
Q  7 catcctctattaccgttgattggtttgctcaagtctcatggaaagcttgtaatggttggtgcacctgaaaagcctctagagcttcctgtttttcctttac 106  Q
    |||||| | ||||| ||||||||| |  | || ||||||||||| ||||| ||||||||||||||||| |||||||| ||||| || || ||||||||||    
T  28431201 catcctttgttacctttgattggtcttttgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttac 28431300  T
Q  107 tt 108  Q
    ||    
T  28431301 tt 28431302  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 28431502 - 28431572
Alignment:
Q  230 gtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgc 300  Q
    ||||||||||||||| ||| ||| ||  |||| ||||| || |||||||| ||||||||||| ||||||||    
T  28431502 gtagggagaaagataataggagggagcctgatcggaggaattaaggagacacaagaaatgatagattttgc 28431572  T

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