View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_high_7 (Length: 389)
Name: NF6991_high_7
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 45 - 379
Target Start/End: Original strand, 18645836 - 18646170
Alignment:
| Q |
45 |
gtggacaagcttttgcatatactttaagaaaagataaagggtattagaggctgatctatcttcaaaggaaatatgcttcagtttcgtaacacagcacatc |
144 |
Q |
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| T |
18645836 |
gtggacaagcttttgcatatactttaagaaaagataaagggtattagaggctgatctatcttcaaaggaaatatgctccagtttcgtaacacagcacatc |
18645935 |
T |
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| Q |
145 |
attcttaattaggggtaaacacacttattctcttagttcaagaaacttcaataactgcttaagctttgagcatgtaatttttcttctgtataatatactt |
244 |
Q |
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| T |
18645936 |
attcttaattaggggtaaacacacttattctcttagttcaagaaacttcaataactgcttaagctttgagcatgtaatttttcttctgtataatatactt |
18646035 |
T |
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| Q |
245 |
caacaacaaatgacatagtgtgttcagaaataagaacctaatttctttacatgcattatacatgaatgacaatgatatttttaacacactcaaattatga |
344 |
Q |
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| T |
18646036 |
caacaacaaatgacatagtgtgttcagaaataagaacctaatttctttacatgcattatacatgaatcacaatgatatttttaacacactcaaattatga |
18646135 |
T |
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| Q |
345 |
atctcaatcatactttttgctaccggatacaacac |
379 |
Q |
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| T |
18646136 |
atctcaatcatactttttgctaccggatacaacac |
18646170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 18649038 - 18649129
Alignment:
| Q |
68 |
ttaagaaaagataaagggtattagaggctgatctatcttcaaaggaaatatgcttcagtttcgtaacacagcacatcattcttaattaggggtaaa |
163 |
Q |
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| T |
18649038 |
ttaagaaaagataaagggtattagagtctg----atcttcaaagggattatgctccaatttcttaactcaacatatcatacttaattagaggtaaa |
18649129 |
T |
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