View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_low_1 (Length: 473)
Name: NF6991_low_1
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 26688144 - 26687673
Alignment:
| Q |
1 |
ttagaggtacaatttcttggaacctgctacaagtttatcacatcaaatactactaaactaatcaatgcatttggattttctggggtcacaaattcatgaa |
100 |
Q |
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| T |
26688144 |
ttagaggtacaatttcttggaacctgctacaagtttatcacatcaaatactactaaactaatcaatgcatttggattttctgtggtcacaaattcatgaa |
26688045 |
T |
|
| Q |
101 |
gtcaaaacatcgatgaatcgagatcgtatgatgtataaaataaactaattgtgannnnnnnnnaaaactctaaaatactgaacttgaaatatggatcatc |
200 |
Q |
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| T |
26688044 |
gtcaaaacatcgatgaatcgagatcggatgatgtataaaataaactaattttgatttttttttaaaactctaaaatactgaacttgaaatatggatcatt |
26687945 |
T |
|
| Q |
201 |
tgatcttaatcctacggtcatcgatgtgttgactatgtaaacggtgagatttgtgactacatcaaatctaaatccctagtcaatgattgtagtgaaaagg |
300 |
Q |
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| T |
26687944 |
tgatcttaatcctacggtcatcgatgtgttgactatgtaaacggtgagatttgtgactacatcaaatctaaatccctagtcaatgattgtagtgaaaagg |
26687845 |
T |
|
| Q |
301 |
agggactttataggctttgatcctctttgatcctcaaaccaaatcttaatcaccagattaatctaaccgttgagatttattgggatcggatgagtgtatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
26687844 |
agggactttataggctttgatcctctttgatcctcaaaccaaatcttaatcaccagattaatctaaccgttgagatttattgggatctgatgagtgtgtt |
26687745 |
T |
|
| Q |
401 |
gatctctcaaccgttagtctaactgtttgagatattagattaatctaagggttaggatattattggagatgc |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| |
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| T |
26687744 |
gatctctcaaccgttagtctaactgtttgagatattagattaatctaagggttaggattttgtcggagatgc |
26687673 |
T |
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