View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_low_11 (Length: 325)
Name: NF6991_low_11
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 49466151 - 49466452
Alignment:
| Q |
1 |
gagttcaattttgctataattgacatgctgtttggtgtactgtttgtgtcctgcttttacccattatgaagaccaggtacaaaagaatatcttctgatta |
100 |
Q |
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| T |
49466151 |
gagttcaattttgctataattgacatgctgtttggtgtactgtttgtgtcctgcttttacccattatgaagaccaggtacaaaagaatatcttctgatta |
49466250 |
T |
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| Q |
101 |
aagaagagttgaggaaggtattgacaaagggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaacacagg |
200 |
Q |
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| T |
49466251 |
aagaagagttgaggaaggtattgacaaagggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaacacagg |
49466350 |
T |
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| Q |
201 |
tatacatctagctcaggggattaatttctaaaataagaatgctgttagttttcacacagtttccagcaaaatcaaccaatgaataaatctgaatcttgta |
300 |
Q |
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| T |
49466351 |
tatacatctagctcaggggattaatttctaaaataagaatgctgttagttttcacacagtttccagcaaaatcaaccaatgaataaatctgaatcttgta |
49466450 |
T |
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| Q |
301 |
ta |
302 |
Q |
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|| |
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| T |
49466451 |
ta |
49466452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 129 - 302
Target Start/End: Original strand, 52087769 - 52087942
Alignment:
| Q |
129 |
gggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaacacaggtatacatctagctcaggggattaatttc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
52087769 |
gggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaatagaggtatacatctagctcaggggattaatttc |
52087868 |
T |
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| Q |
229 |
taaaataagaatgctgttagttttcacacagtttccagcaaaatcaaccaatgaataaatctgaatcttgtata |
302 |
Q |
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| T |
52087869 |
taaaataagaatgctgttagttttcacacagtttccagcaaaatcaaccaatgaataaatcggaatcttgtata |
52087942 |
T |
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