View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_low_17 (Length: 275)
Name: NF6991_low_17
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 7125833 - 7125591
Alignment:
| Q |
14 |
gtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaac |
113 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
7125833 |
gtgcacatgaatcagttgtagataactaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactggctttccaaattttatcacctaaaac |
7125734 |
T |
|
| Q |
114 |
aatgttgttcctccagcgccatatccaccgtatagcagcaacaaaactgactagcgactgaattaaattagggnnnnnnntatgttagaaaaattaatgg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7125733 |
aatgttgttcctccagcgccatatccaccgtatagcagcaacaaaactgactagcgactgaattaaattaggaaaaaaaatatgttagaaaaattaatgg |
7125634 |
T |
|
| Q |
214 |
ccattgtgaaaaatctttctttgtaacataattcatagatgtat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
7125633 |
ccattgtgaaaaatctttctttgtaacat-attcgtagatgtat |
7125591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 6756418 - 6756275
Alignment:
| Q |
15 |
tgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaaca |
114 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |
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| T |
6756418 |
tgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagctttccaagttttatcacccaaaaca |
6756319 |
T |
|
| Q |
115 |
atgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
158 |
Q |
| |
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|||||||||||||| ||||||||||||| |||| ||||||||| |
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| T |
6756318 |
atgttgttcctccaacgccatatccaccatataatagcaacaaa |
6756275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 21812333 - 21812464
Alignment:
| Q |
27 |
agttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctc |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
21812333 |
agttgtagataacaaaaccatatcctcaaccacgaggttaatttgtcggatcacatcgctggctttccaagttttatcacccaaaacaatgttgttcctc |
21812432 |
T |
|
| Q |
127 |
cagcgccatatccaccgtatagcagcaacaaa |
158 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |
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| T |
21812433 |
cagcgccatatccaccatatagcagcaacaaa |
21812464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 41011736 - 41011593
Alignment:
| Q |
15 |
tgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaaca |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |
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|
| T |
41011736 |
tgcacatgaattagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagctttccaagttttatcacccaaaaca |
41011637 |
T |
|
| Q |
115 |
atgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
41011636 |
atgttgttcctccagcgccatatccaccatatagcagcaacaaa |
41011593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 49348831 - 49348688
Alignment:
| Q |
15 |
tgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaaca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |
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|
| T |
49348831 |
tgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagctttccaagttttatcacccaaaaca |
49348732 |
T |
|
| Q |
115 |
atgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
49348731 |
atgttgttcctccagcgccatatccaccatatagtagcaacaaa |
49348688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 1808138 - 1808281
Alignment:
| Q |
15 |
tgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaaca |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
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| T |
1808138 |
tgcacatgaatcaattgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactagcttttcaagttttatcacccaaaaca |
1808237 |
T |
|
| Q |
115 |
atgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
1808238 |
atgttgttcctccagcgccatatccaccatatagtagcaacaaa |
1808281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 31076334 - 31076191
Alignment:
| Q |
15 |
tgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaaca |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||| |
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| T |
31076334 |
tgcacatgaatcaattgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagctttccaagttttatcacccaataca |
31076235 |
T |
|
| Q |
115 |
atgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
31076234 |
atgttgttcctccagcgccatatccaccatatagcagcaacaaa |
31076191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 23109680 - 23109537
Alignment:
| Q |
15 |
tgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaaca |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
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|
| T |
23109680 |
tgcacatgtatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttttcaagttttatcacccaaaaca |
23109581 |
T |
|
| Q |
115 |
atgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
23109580 |
atgttgttcctccagcgccatatccaccatatagtagcaacaaa |
23109537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 27525187 - 27525044
Alignment:
| Q |
15 |
tgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaaca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |||||| |
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|
| T |
27525187 |
tgcacatgaatcagttgtagataacaaaaccatatccttaaccatgaggttaatttgtcagatcacatcactagctttccaagttttatcacccaaaaca |
27525088 |
T |
|
| Q |
115 |
atgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
158 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
27525087 |
atgttgttcctccagcgctatatccaccatatagtagcaacaaa |
27525044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 26880818 - 26880681
Alignment:
| Q |
15 |
tgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaaca |
114 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||| |
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|
| T |
26880818 |
tgcacatgaatcagttgtagacaacaaagccatatccttaaccattaggttaatttgtcggatcatatcgctggctttccaagttttatcacccaaaaca |
26880719 |
T |
|
| Q |
115 |
atgttgttcctccagcgccatatccaccgtatagcagc |
152 |
Q |
| |
|
|||||||| ||| |||||| |||||||| ||||||||| |
|
|
| T |
26880718 |
atgttgtttctctagcgccgtatccaccatatagcagc |
26880681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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