View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_low_2 (Length: 434)
Name: NF6991_low_2
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_low_2 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Original strand, 21181983 - 21182387
Alignment:
| Q |
30 |
gatgaacctaagtctacctatttttatatttacataagctaattatactctttaattttggttttaggagaatggttcaatgcagatactgaggccatca |
129 |
Q |
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| T |
21181983 |
gatgaacctaagtctacctatttttatatttacataagctaattatactctttaattttggttttaggagaatggttcaatgcagatactgaggccatca |
21182082 |
T |
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| Q |
130 |
tagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctacacaatcaatggacttccagggccattgtataactgctctaaaaaaggtat |
229 |
Q |
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| T |
21182083 |
tagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctacacaatcaatggacttccagggccattgtataactgctctaaaaaaggtat |
21182182 |
T |
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| Q |
230 |
caagtgcagataaatatatattctaggaataatccccaattattaaaagaatgaagcaaataattcctaaaattgaaaatatgaagccttaaacgtaact |
329 |
Q |
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| T |
21182183 |
caagtgcagataaatatatcttattgaaataatccccaattattaaaagaatgaagcaaataattcctaaaattgaaaatatgaagccttaaacgtaact |
21182282 |
T |
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| Q |
330 |
acttataatataatagttgtgttatttgaacatcaacgtgcaaacaccgtgcgtgaaactgtacttgtttatctctatctcttactttttattttctaca |
429 |
Q |
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| T |
21182283 |
actcataatataatagttgtgttatttgaacatcaacgtgcaaacaccgtgtgtgaaactgtacgtgtttatctctatctcttactttttattttctaca |
21182382 |
T |
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| Q |
430 |
actta |
434 |
Q |
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| T |
21182383 |
actta |
21182387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 21204806 - 21204950
Alignment:
| Q |
91 |
ttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctacacaatcaatgg |
190 |
Q |
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| T |
21204806 |
ttttaggtgaatggttcaatgcagatcctgaggcaatcatagcacaagctctccaaactggtggaggaccaaatgtctctgatgcatacacaattaatgg |
21204905 |
T |
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| Q |
191 |
acttccagggccattgtataactgctctaaaaaaggtatcaagtg |
235 |
Q |
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| T |
21204906 |
acttccagggccattgtataattgttctgctaatggtatcaagtg |
21204950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 21852345 - 21852476
Alignment:
| Q |
80 |
tttaattttggttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctac |
179 |
Q |
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| T |
21852345 |
tttaattttggttttaggtgaatggttcaatacagatcctgaggcaatcattgcacaagctctacaaactggtggaggaccaaatgtctctgatgcatat |
21852444 |
T |
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| Q |
180 |
acaatcaatggacttccagggccattgtataa |
211 |
Q |
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| T |
21852445 |
acaatcaatggacttccaggaccattgtataa |
21852476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 21209070 - 21209204
Alignment:
| Q |
102 |
tggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctacacaatcaatggacttccagggc |
201 |
Q |
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| T |
21209070 |
tggttcaatgcagatcctgaggcaatcattgcacaagccctccaaactggtggaggaccaaatgtctctgatgcatacacaattaattgacttccaggga |
21209169 |
T |
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| Q |
202 |
cattgtataactgctctaaaaaaggtatcaagtgc |
236 |
Q |
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| T |
21209170 |
cattgtataattgttctgctaaaggtttcaagtgc |
21209204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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