View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_low_25 (Length: 231)
Name: NF6991_low_25
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 12129603 - 12129815
Alignment:
| Q |
5 |
gcaacaaaggaagacatttttaattaactgtttagaaaattggctgaaaacaacattagtgagaggagaaagagggatggatagcatagtttcagaatct |
104 |
Q |
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| T |
12129603 |
gcaacaaaggaagacatttttaattaactgttcagaaaattggctgaaaacaacattagagagaggagaaagagggatggatagcatagtttcagaatct |
12129702 |
T |
|
| Q |
105 |
aatcctggccacaaaattattggataggcctatctttttatgaaatgaaaaactatcagaaaatcttcttccaatttaatcttgaccacaaaagtatatt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12129703 |
aatcctggccacaaaattattggataggcctatctttttatgaaatgaaaaactatcagaaaatcttcttccaatttaatcttgaccac-aaagtatatt |
12129801 |
T |
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| Q |
205 |
ctttggtccaaatt |
218 |
Q |
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|||||| ||||||| |
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| T |
12129802 |
ctttggaccaaatt |
12129815 |
T |
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