View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6991_low_5 (Length: 410)
Name: NF6991_low_5
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 13447798 - 13447424
Alignment:
| Q |
20 |
tgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttctgtcagtctgacattgc |
119 |
Q |
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| T |
13447798 |
tgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttctgtcagtctgacattgc |
13447699 |
T |
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| Q |
120 |
tgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggtttctgtactttaaatctctagattttgtgggatcctgtcnnnnnnnnnnnnnnnn |
219 |
Q |
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| T |
13447698 |
cgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggttcctgtactttaaatctctagattttgtgggatcctgtctgtttctttttctttt |
13447599 |
T |
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| Q |
220 |
gaccgaagattagcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtctggttttcaatcatctacaatctgt |
319 |
Q |
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| T |
13447598 |
gaccgaagattagcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtctggttttcaatcatctacaatctgt |
13447499 |
T |
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| Q |
320 |
gcaccaacactgttgta-ttttttcgatggatctcttgtcgtgttggtgatccattggtgtcgtcgttgaggcgt |
393 |
Q |
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| T |
13447498 |
gcaccaacactgttgtatttttttcgatggatctcttgtcgtgttgatgatccattggtgtcgtcgttgaggcgt |
13447424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 13454241 - 13454185
Alignment:
| Q |
20 |
tgtacgtggctattctaacttcttaatgtgtttttgcatttatttt-aatttttcaa |
75 |
Q |
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||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
13454241 |
tgtacgtggttcttctaacttcttaatgtgttttcgcatttattttcaatttttcaa |
13454185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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