View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6991_low_8 (Length: 385)
Name: NF6991_low_8
Description: NF6991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6991_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 3225692 - 3225853
Alignment:
| Q |
18 |
gtaacgtctctaggaatgggttaaaactataacctaatatatctcatggattgatctttacgaccggagtcaagaatacacatgtttataccaaaacgta |
117 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3225692 |
gtaacttctctaggaatgggttcaaactataacctaatatgtctcatggattgatctttacgaccggagtcaagaatacacatgtttataccaaaacgta |
3225791 |
T |
|
| Q |
118 |
tgaacgatactcatcaattttttgaatcatcgataagtgattagcatggtgcaataatagat |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3225792 |
tgaacgatactcatcaattttttgaatcatcgataagtgattagcatggtgcaataatagat |
3225853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 211 - 372
Target Start/End: Original strand, 3225885 - 3226045
Alignment:
| Q |
211 |
tacgtgtttgataacacagtgagtttgccagaagcacggagaaccattgtgatatcaaacatgcacgaatagtgatacatacatgtgaacagcgacatta |
310 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3225885 |
tacgtgtttgataacaca-tgagtttgccagaagcacggagaaccattgtgatatcaaacatgcacgaatagtgatacatacatgtgaacggcgacatta |
3225983 |
T |
|
| Q |
311 |
aggtcatgagcaactccttcaggaattggaacatatgtttcaacagcaactttatgggcttc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3225984 |
aggtcatgagcaactccttcaggaattggaacatatgtttcaacagcaactttatgggcttc |
3226045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University