View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6992_high_5 (Length: 240)
Name: NF6992_high_5
Description: NF6992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6992_high_5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19857871 - 19857611
Alignment:
| Q |
1 |
ctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagcttt---- |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19857871 |
ctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagctttcttc |
19857772 |
T |
|
| Q |
97 |
-----------------tggttgaagttggtcaacccacttaacccattgtgtgcgtgggttaccaaattcttaaaacaaacaaaccatatttggatgct |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19857771 |
cacacagattcatattttggttgaagttggtcaacccacttaacccattgtgtgcgtgggttaccaaattcttaaaacaaacaaaccatatttggatgct |
19857672 |
T |
|
| Q |
180 |
ttcagacatatattaattgctaatttgatatggattatttataatgtaaaggaagtataat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19857671 |
ttcagacatatattaattgctaatttgatatggattatttataatgtaaaggaagtataat |
19857611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19853313 - 19853230
Alignment:
| Q |
1 |
ctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa |
84 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||||| |||||||| |||||| || ||||||||| ||||||||||||| |
|
|
| T |
19853313 |
ctcagaacaccatttgtcaacaaccccacataacaagttttgatctttctttatgcagctcttagtactcataatagcatcaaa |
19853230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 9814833 - 9814755
Alignment:
| Q |
6 |
aacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa |
84 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| ||||||||||||||||||| || |||||| | ||||||||||| |
|
|
| T |
9814833 |
aacaccatttctcaacaaccccatatagcaagttttgatctttcattatgcggcacttggtactcattatagcatcaaa |
9814755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 26355244 - 26355339
Alignment:
| Q |
1 |
ctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagcttt |
96 |
Q |
| |
|
|||| |||||||||| || |||||||| |||| ||||||| ||| ||||| |||||||||||| |||||| | |||||||||||||| ||||||| |
|
|
| T |
26355244 |
ctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatgcggcatttggtactcattatagcatcaaaaatcccagcttt |
26355339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University