View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6992_low_1 (Length: 442)
Name: NF6992_low_1
Description: NF6992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6992_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 45746217 - 45745793
Alignment:
| Q |
1 |
ttggaaggaacggttttggtggtggttcaagctccctcggcaatcctttgccaatgggacttgatcttggagatggtcgctcaatgcctggtattagttc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45746217 |
ttggaaggaatggttttggtggtggttcaagctccctcggcaatcctttgccaatgggacttgatcttggagatggtcgctcaatgcctggtattagttc |
45746118 |
T |
|
| Q |
101 |
accaatgggattaatgggaagtagtagtgatgttcagcttgagagatcggctctaatagatcttgcattggctgctatggatgaattattaaagatggct |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45746117 |
accaatgggattgatgggaagtagtagtgatgttcagcttgagagatcggctctaatagatctagcattggctgctatggatgaattattaaagatggct |
45746018 |
T |
|
| Q |
201 |
cagacagatagtcctgtttggattaagggtttggatggagagagagacatgttgaatcaagaagagtatgcacggttgatttcttcttgtattggtccta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45746017 |
cagacagatagtcctgtttggattaagggtttggatggagagagagacatgttgaatcaagaagagtatgcacggttgatttcttcttgtattggtccta |
45745918 |
T |
|
| Q |
301 |
aacccgctggctttgtcactgaagctacgagagatactgggatagtaataatcaacagtttagcacttgtggaaactttgatggatgcggtatgattatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45745917 |
aacccgctggctttgtcactgaagctacgagagatactgggatagtaataatcaacagtttagcacttgtggaaactttgatggatgcggtatgattatc |
45745818 |
T |
|
| Q |
401 |
aaatactctacctcatggtgttctt |
425 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
45745817 |
aaatattctacctcatggtgttctt |
45745793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University