View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6992_low_10 (Length: 210)
Name: NF6992_low_10
Description: NF6992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6992_low_10 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 42600271 - 42600138
Alignment:
| Q |
28 |
agaaatgtcaactcctactactacttctgaaagagattggcgtaactgggttgaattgcatgatagccaaagatattgttgacattggtaaatttattaa |
127 |
Q |
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| T |
42600271 |
agaaatgtcaacacctactactacttctgaaagagattggcgtaattgggttgaattgcatgatagccaaagatattgttgacattggtaaatttattaa |
42600172 |
T |
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| Q |
128 |
ttttcagtttaacgaagatacttctaatatgttt |
161 |
Q |
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| T |
42600171 |
ttttcagtttaatgaagatacttctaatatgttt |
42600138 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42600330 - 42600288
Alignment:
| Q |
1 |
tctatcaagtggtaacaaagccaccttagaaatgtcaactcct |
43 |
Q |
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| T |
42600330 |
tctatcaagtggtaacaaagccaccttagaaatgtcaactcct |
42600288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 180
Target Start/End: Original strand, 34594 - 34625
Alignment:
| Q |
149 |
ttctaatatgtttcaagttctctctcggccta |
180 |
Q |
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| T |
34594 |
ttctaatatgtttcaagttctctctcggccta |
34625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 180
Target Start/End: Complemental strand, 15427644 - 15427613
Alignment:
| Q |
149 |
ttctaatatgtttcaagttctctctcggccta |
180 |
Q |
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| T |
15427644 |
ttctaatatgtttcaagttctctctcggccta |
15427613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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