View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6992_low_4 (Length: 376)
Name: NF6992_low_4
Description: NF6992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6992_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 43104252 - 43104614
Alignment:
| Q |
13 |
aaaatcagaatgatcgaaaaatacttcacctcgccactatcgtaatttggatcattgcggtctatgtgagaatcaacttctgtgtccagcaatttccccc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43104252 |
aaaatcagaatgatcgaaaaatacttcacctcgccactatcgtaatttggatcattgcggtctatgtgagaatcaacttctgtgtccagcaatttccccc |
43104351 |
T |
|
| Q |
113 |
aagtgcccttaccaccagcaccatctgcatccacaagatgaacaatgtagattattaccacatgaagaccattataaaaaacaattggtaaacaatgaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43104352 |
aagtgcccttaccaccagcaccatctgcatccacaagatgaacaatgtagattattaccacatgaagaccattataaaaaacaattggtaaacaatgaca |
43104451 |
T |
|
| Q |
213 |
acacaatcacatattagcccagaattttgaa-----nnnnnnnaatcaaacctagaagcttaccattcctctcaagtttatgaaaattatccaaataata |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43104452 |
acacaatcacatattagccctgaattttgaagggggggaaaaaaatcaaacctagaagcttaccattcctctcaagtttatgaaaattatccaaataata |
43104551 |
T |
|
| Q |
308 |
tgagtaagtgaatttactagaaatttaggtaaatttactcttaaaacaattgaagtatcagcc |
370 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43104552 |
tgtgtaagtgaatttactagaaatttaggtaaatttactcttaaaacaattgaagtatcagcc |
43104614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University