View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6992_low_6 (Length: 280)
Name: NF6992_low_6
Description: NF6992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6992_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 14916209 - 14915961
Alignment:
| Q |
14 |
tgtgtaaggtgcggttttattgtaatgccacaggtacgtagcatgggctcagagccgtagttgcttgtttgcaacgcctgtgaatcagaaaataacattt |
113 |
Q |
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| T |
14916209 |
tgtgtaagatgcggttttattgtaatgccacaggtacgtagcatgggctcagagccgtagttgcttgtttgcaacgcctgtgaatcagaaaataacattt |
14916110 |
T |
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| Q |
114 |
agtaaagtaacatttatatgacaattcattactcgatacatatcaaattacttacatctgacaagaccttcatccgttctagaggattctgcctcgactg |
213 |
Q |
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| T |
14916109 |
agtaaagtaacatttatatgacaattcattactcgatacatatcaaatgacttacatctgacaagaccttcatccgttctagaggattctgcctcgactg |
14916010 |
T |
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| Q |
214 |
ttccacaagggaggctctttgacgtgcagagagggctttggtgtatcgt |
262 |
Q |
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| T |
14916009 |
ttccacaagggaggctctttgatgtgcagagagggctttggtgtatcgt |
14915961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 38115436 - 38115203
Alignment:
| Q |
30 |
ttattgtaatgccacaggtacgtagcatgggctcagagccgtagttgcttgtttgcaacgcctgtgaatcagaaaataacatttagtaaagtaacattta |
129 |
Q |
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| T |
38115436 |
ttattgaaattccacagttacgtagcatgggttcagagccatagtcacttgtttttaaggcctgtaaatcagaaaataatattcagcgaagtgacaatca |
38115337 |
T |
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| Q |
130 |
tatgacaattcattactcgatacatatcaaa-ttacttacatctgacaagaccttcatccgttctagaggattctgcctcgactgttccacaagggaggc |
228 |
Q |
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| T |
38115336 |
tatgacatttcattactcaatataaatcaaagagacttacatccgtcaagaccctcatccgctcttgaggcttctgcctagacttttccacaagggagga |
38115237 |
T |
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| Q |
229 |
tctttgacgtgcagagagggctttggtgtatcgt |
262 |
Q |
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| T |
38115236 |
tctctggagtgtggacagggctttggtatatcgt |
38115203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 38123751 - 38123523
Alignment:
| Q |
30 |
ttattgtaatgccacaggtacgtagcatgggctcagagccgtagttgcttgtttgcaacgcctgtgaatcagaaaataacatttagtaaagtaacattta |
129 |
Q |
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| T |
38123751 |
ttattgaaatgccacagttacgtagcattggttcagagccatagttgcttgctttcaacgcctgtaaatcagcaaaaataattcagtgaagtgacattca |
38123652 |
T |
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| Q |
130 |
tatgacaattcattactcgatacatatcaaatt-acttacatctgacaagaccttcatccgttctagaggattctgcctcgactgttccacaagggaggc |
228 |
Q |
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| T |
38123651 |
gacgacaattcatta-----tgtttataaaagagactcacattagacaagaccctcatccgttctacaggcttctgcctcgacttttccacaagggagga |
38123557 |
T |
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| Q |
229 |
tctttgacgtgcagagagggctttggtgtatcgt |
262 |
Q |
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| T |
38123556 |
tcgttgagatgtggagagggctttggtgtatcgt |
38123523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 43722398 - 43722435
Alignment:
| Q |
123 |
acatttatatgacaattcattactcgatacatatcaaa |
160 |
Q |
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| T |
43722398 |
acattcatatgacaattcattactcgatatatatcaaa |
43722435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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