View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6992_low_7 (Length: 243)

Name: NF6992_low_7
Description: NF6992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6992_low_7
NF6992_low_7
[»] chr3 (20 HSPs)
chr3 (16-243)||(19858044-19858267)
chr3 (16-232)||(19853495-19853707)
chr3 (18-232)||(24839899-24840109)
chr3 (16-230)||(19943705-19943911)
chr3 (18-215)||(19848990-19849183)
chr3 (18-215)||(19956084-19956277)
chr3 (18-215)||(20036528-20036721)
chr3 (18-215)||(19838393-19838586)
chr3 (18-217)||(20016126-20016321)
chr3 (18-215)||(20046123-20046313)
chr3 (18-208)||(19812287-19812470)
chr3 (18-215)||(26647004-26647194)
chr3 (24-212)||(26653155-26653336)
chr3 (19-149)||(19971677-19971803)
chr3 (128-215)||(19951124-19951211)
chr3 (138-215)||(19989522-19989599)
chr3 (34-215)||(19818557-19818731)
chr3 (136-207)||(30914651-30914722)
chr3 (18-80)||(19951252-19951314)
chr3 (18-80)||(19989653-19989715)
[»] chr8 (4 HSPs)
chr8 (16-216)||(22689578-22689774)
chr8 (119-215)||(22652110-22652206)
chr8 (132-195)||(22685715-22685778)
chr8 (18-116)||(22651818-22651912)
[»] chr1 (1 HSPs)
chr1 (18-224)||(1717205-1717404)
[»] chr5 (2 HSPs)
chr5 (18-215)||(26354852-26355045)
chr5 (18-215)||(9815037-9815227)
[»] chr4 (2 HSPs)
chr4 (25-215)||(6398261-6398444)
chr4 (132-215)||(6397773-6397856)
[»] chr7 (6 HSPs)
chr7 (132-183)||(12581424-12581475)
chr7 (126-183)||(12497241-12497298)
chr7 (126-183)||(12521106-12521163)
chr7 (178-215)||(12496285-12496322)
chr7 (178-215)||(12520150-12520187)
chr7 (178-215)||(12580439-12580476)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 19858267 - 19858044
Alignment:
Q  16 tcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  19858267 tcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaa----tagcaataggaaacaaagatcttttca 19858172  T
Q  116 cattaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19858171 cattaaagtatctattaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 19858072  T
Q  216 cactgttgtggaaggtgaaaatactttt 243  Q
    ||||||||||||||||||||||||||||    
T  19858071 cactgttgtggaaggtgaaaatactttt 19858044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 19853707 - 19853495
Alignment:
Q  16 tcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||    |||||||||||||||||||||||||||    
T  19853707 tcaaatcgttatataagctagccaaaacagcaggtgccaaagcaatagtattacctctagcaagacgaa----tagcaataggaaacaaagatcttttca 19853612  T
Q  116 cattaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    || |||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| | | ||||| |  ||||||    
T  19853611 caataaagtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaaagaaaaaagtcatcca 19853512  T
Q  216 cactgttgtggaaggtg 232  Q
    ||| | |||||||||||    
T  19853511 cacagatgtggaaggtg 19853495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 24839899 - 24840109
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||| |||||||| |||  |||    ||||| |||||||||||| | ||||||     
T  24839899 aaatcgttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagctagatgaac----agcaacaggaaacaaagaacatttcact 24839994  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatccaca 217  Q
      | ||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24839995 agagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatccaca 24840094  T
Q  218 ctgttgtggaaggtg 232  Q
    ||| ||| |||||||    
T  24840095 ctgatgtagaaggtg 24840109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 19943911 - 19943705
Alignment:
Q  16 tcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttca 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||  |||    ||||||||||||||  || |||||||    
T  19943911 tcaaatccttatataagctagccaaaacagcaggtgccaaagccataggaatccctctagcaagatgaac----agcaataggaaaca--gaacttttca 19943818  T
Q  116 cattaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    |   |  |||||||| ||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19943817 ccacattgtatctatgaggaaaaacaaa--ttgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaatatccatcca 19943720  T
Q  216 cactgttgtggaagg 230  Q
    ||||| |||||||||    
T  19943719 cactgatgtggaagg 19943705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 19849183 - 19848990
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| |||||||  ||||| |||||||||||||| ||||| |||  ||||||||||||||||   ||    |||||||||||||||||| ||||||||     
T  19849183 aaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagcaagatatac----agcaataggaaacaaagaacttttcacc 19849088  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
      | ||| | ||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  19849087 aaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 19848990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 19956277 - 19956084
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| ||||||| |||||| |||||||| ||||||||||| |||| ||||||||||||||||  ||| |    |||||||||||||| | ||||||||     
T  19956277 aaatccttatatatgctagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacaa----caataggaaacaaataacttttcacg 19956182  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
      | | ||| ||| ||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  19956181 gaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 19956084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 20036528 - 20036721
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| |||||||  ||||| |||||||||||||| ||||| |||  ||||||||||||||||   ||    |||||||||||||||||| ||||||||     
T  20036528 aaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagcaagatatac----agcaataggaaacaaagaacttttcacc 20036623  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
      | ||| | ||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  20036624 aaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 20036721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 19838586 - 19838393
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| ||||||| |||||| |||||||| ||||||||||| |||| ||||||||||||||||  ||| |    |||| ||||||||| | ||||||||     
T  19838586 aaatcattatatatgctagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaacaa----caattggaaacaaaaagcttttcacg 19838491  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
      | ||| |  ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  19838490 caagagtgttgattaggaaaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatcca 19838393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 20016126 - 20016321
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| ||||||| ||||||||| ||||| ||||||||||| |||| ||||| ||||||||||  ||    ||||||| ||||||||| | ||||||||     
T  20016126 aaatctttatatatgctagccaagacagctggtgccaaagcaataggatttcgtctagcaagatgaa----tagcaatcggaaacaaacaacttttcacg 20016221  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatccaca 217  Q
      | ||||| ||| ||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||   ||| |||||||||||||    
T  20016222 gaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccaca 20016321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 20046313 - 20046123
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| ||||||| |||| |||||||||||||||||||||| || | ||||||||||||||||  ||    ||||||||| ||||||| |  |||||||     
T  20046313 aaatccttatatatgctacccaaaacagcaggtgccaaagcaattggatttcctctagcaagattaa----tagcaatagaaaacaaacaatttttcacc 20046218  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
     ||   | | ||| |||||||||||||||||| |||||||||| ||| || ||||| || |||||||||||||||||||||||||| |||||||||||    
T  20046217 ata---tttttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctttatcgatgaacatatccatcca 20046123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 19812470 - 19812287
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| ||||||| ||||||||| ||||| ||||||||||| |||| ||  ||||||||||||  ||    |||| || |||||||||||  |||||||     
T  19812470 aaatctttatatatgctagccaagacagctggtgccaaagcaataggataccctctagcaagaagaa----tagcgatcggaaacaaagactttttcacc 19812375  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatat 208  Q
       || ||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | | ||||||||    
T  19812374 ---aaatatttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaacgaaaatat 19812287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 26647194 - 26647004
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| |||||||||||||| |||||||| ||||||||||| || | ||| ||||||||||||  |||    |||||||||||||||| | ||||||||     
T  26647194 aaatccttatataagctagctaaaacagccggtgccaaagcaattggattccctctagcaagatgaac----agcaataggaaacaaacaacttttcacc 26647099  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
       || | |  || |||||||||| ||| ||| |||||||||| ||| ||||||||||| |||||||||||||||||||| |||||| |||| |||||    
T  26647098 ---aaatttagatgaggaaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaatttcactacctttatccatgaaactatcgatcca 26647004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 26653336 - 26653155
Alignment:
Q  24 ttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcacattaaag 123  Q
    |||||||  ||||| |||||||| ||||||||||| |||| ||||||||||||||||  |||    |||||||| ||||||||| ||||||||    ||     
T  26653336 ttatatatactagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaac----agcaatagaaaacaaagaacttttcact---aat 26653244  T
Q  124 tatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccat 212  Q
    | | ||| |||||||||||||||||| |||||||  ||||| ||||| ||||| ||||||||||||||||  || ||||||||||||||    
T  26653243 tctatatgaggaaaaacaaaaattgacaaccaagctgcaaggaatgcatcatgttcaatttcactaccttagtcaatgaaaatatccat 26653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 19971803 - 19971677
Alignment:
Q  19 aatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcacat 118  Q
    |||| ||||||||||||||||||||||  ||||||||||| |||||||| |||||| | |    ||  ||||||||||||||||||||| ||||||||      
T  19971803 aatccttatataagctagccaaaacagttggtgccaaagcaatagtattgcctctaacca----aatgaatagcaataggaaacaaagaacttttcacta 19971708  T
Q  119 taaagtatctattaggaaaaacaaaaattga 149  Q
    |||||||||||| || |||||||||||||||    
T  19971707 taaagtatctatgagaaaaaacaaaaattga 19971677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 19951211 - 19951124
Alignment:
Q  128 tattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    |||||||||||||||||| ||| ||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||||||||||||    
T  19951211 tattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctttatcagtgaaaatatccatcca 19951124  T

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Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 19989599 - 19989522
Alignment:
Q  138 aacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    |||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatcca 19989522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 19818731 - 19818557
Alignment:
Q  34 tagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcacattaaagtatctattag 133  Q
    ||||||||||||| ||||||||||| |||| ||| ||||||||||||  |||    ||||| |||||||| | |  |||||||   ||| | | ||| ||    
T  19818731 tagccaaaacagccggtgccaaagcaataggattccctctagcaagattaac----agcaacaggaaacagataatttttcacc--aaattct-tatgag 19818639  T
Q  134 gaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    |||||||||||||||| ||||||||||||||||| |||||||| ||||||||  |||||||| | || ||||| ||||||||    
T  19818638 gaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaatttcggtacctttaccaataaaaatttccatcca 19818557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 30914722 - 30914651
Alignment:
Q  136 aaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaata 207  Q
    |||||||||||||| |||||||||| ||| ||||||||||| |||||||||||| ||||||| |||||||||    
T  30914722 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 30914651  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 19951314 - 19951252
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaaga 80  Q
    ||||| ||||||| |||||| |||||||| || |||||||| |||| ||||||||||||||||    
T  19951314 aaatccttatatatgctagctaaaacagctggagccaaagcaataggatttcctctagcaaga 19951252  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 19989715 - 19989653
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaaga 80  Q
    ||||| ||||| || ||||||||||| |||||||| || || |||| ||||||||||||||||    
T  19989715 aaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaaga 19989653  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 22689578 - 22689774
Alignment:
Q  16 tcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttca 115  Q
    ||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||  ||    ||| ||||| ||||||||| ||||| |    
T  22689578 tcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagccagatgaa----tagaaatagtaaacaaagaacttttga 22689673  T
Q  116 cattaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    |    |  | | ||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||| ||||||||||||| |||||||||    
T  22689674 ccgacatatttttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatgaaaacatccatcca 22689773  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 22652110 - 22652206
Alignment:
Q  119 taaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    |||||||||||| || ||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  22652110 taaagtatctatgagcaaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatcca 22652206  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 22685715 - 22685778
Alignment:
Q  132 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactaccttta 195  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  22685715 aggaaaaacaaaaagtgacaaccaagcagcaagaaatgcttcatgctcaatttcactaccttta 22685778  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 22651818 - 22651912
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcac 116  Q
    ||||| ||||| | ||||||||||||||| ||||| ||||| |||| ||||||||||||||||  |||    |||||||||||||||| | ||||||||    
T  22651818 aaatccttatacatgctagccaaaacagctggtgcaaaagcaataggatttcctctagcaagatgaac----agcaataggaaacaaacaacttttcac 22651912  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 1717404 - 1717205
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| ||||||| |||||| |||||||| ||||||||||| |||| ||||||||||||||||  |||    ||||||||||||||||||| |||||||     
T  1717404 aaatccttatatatgctagctaaaacagccggtgccaaagcaataggatttcctctagcaagatgaac----agcaataggaaacaaagattttttcacc 1717309  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatccaca 217  Q
      ||||  | ||| |||||||||| |||  || |||||||||||||||||||||||||| |||||||||||||||||||| |  |||| ||||||||| |    
T  1717308 --aaagctt-tatgaggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaacaaaaacatccatccata 1717212  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 26354852 - 26355045
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||| ||||||| |||||| |||||||| ||||||||||| |||| ||||||||||||||||  ||    ||||||||||||||||||| ||||||||     
T  26354852 aaatccttatatatgctagctaaaacagccggtgccaaagcaatagaatttcctctagcaagatgaa----tagcaataggaaacaaagaacttttcacc 26354947  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
       | | || |  ||||||||||||||||||| ||||||| | |||  ||||||||||| |||| ||||||||||||||| ||||||| |||||||||    
T  26354948 aacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttcatgttcaacttcactacctttatccatgaaaacatccatcca 26355045  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 9815227 - 9815037
Alignment:
Q  18 aaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcaca 117  Q
    ||||||||||| |  ||||| |||||||| ||||||||||| |||| ||||||||||||||||  ||    ||||||||| ||||||||| ||||||||     
T  9815227 aaatcgttataaatactagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaa----tagcaatagaaaacaaagaacttttcacc 9815132  T
Q  118 ttaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
      |||| || ||| ||  |||||||| ||||| ||||| |||||||  || |||||||||||||||||||||||||| |||||||||| |||||||||    
T  9815131 --aaag-atttatgagttaaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaatttcactacctttgtcgatgaaaaaatccatcca 9815037  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 6398444 - 6398261
Alignment:
Q  25 tatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaaccaatagcaataggaaacaaagatcttttcac-attaaag 123  Q
    |||||| |||||| |||||||| ||||||||| |||| | |||||||||||| |||  |||    |||||||| ||||||| | |||||||| |||   |    
T  6398444 tatatatgctagctaaaacagctggtgccaaaccgattggatttcctctagcgagattaac----agcaatagaaaacaaacaacttttcaccatt---g 6398352  T
Q  124 tatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    | | || ||||||||||||||||| | |||||| ||||||| || |||||||| ||||||||||||||||||| ||| || |||||||||||    
T  6398351 ttt-tactaggaaaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatttcactacctttatagataaacatatccatcca 6398261  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 6397773 - 6397856
Alignment:
Q  132 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    ||||||| || ||||||| ||||| |||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||    
T  6397773 aggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatcca 6397856  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 12581475 - 12581424
Alignment:
Q  132 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatt 183  Q
    |||||||||||||||||| |||||||||||||| || |||||||| ||||||    
T  12581475 aggaaaaacaaaaattgacaaccaagtagcaaggaaggcttcatgttcaatt 12581424  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 12497298 - 12497241
Alignment:
Q  126 tctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatt 183  Q
    ||||| |||||||||||||||||| ||||| |||||||| || |||||||| ||||||    
T  12497298 tctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt 12497241  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 12521163 - 12521106
Alignment:
Q  126 tctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatt 183  Q
    ||||| |||||||||||||||||| ||||| |||||||| || |||||||| ||||||    
T  12521163 tctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt 12521106  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 12496322 - 12496285
Alignment:
Q  178 tcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12496322 tcaatttcactacatttatcgatgaacatatccatcca 12496285  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 12520187 - 12520150
Alignment:
Q  178 tcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12520187 tcaatttcactacatttatcgatgaacatatccatcca 12520150  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 12580476 - 12580439
Alignment:
Q  178 tcaatttcactacctttatcgatgaaaatatccatcca 215  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12580476 tcaatttcactacatttatcgatgaacatatccatcca 12580439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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