View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_high_13 (Length: 410)

Name: NF6993_high_13
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_high_13
NF6993_high_13
[»] chr3 (5 HSPs)
chr3 (213-394)||(4271694-4271875)
chr3 (221-393)||(42346596-42346771)
chr3 (61-125)||(4271538-4271603)
chr3 (1-51)||(4271444-4271494)
chr3 (61-103)||(54540751-54540793)
[»] chr8 (2 HSPs)
chr8 (61-111)||(18979072-18979123)
chr8 (5-45)||(42982710-42982750)
[»] chr6 (1 HSPs)
chr6 (5-48)||(12382761-12382804)
[»] chr5 (3 HSPs)
chr5 (61-103)||(36486449-36486491)
chr5 (61-125)||(1797235-1797300)
chr5 (61-102)||(28538774-28538815)
[»] chr4 (2 HSPs)
chr4 (61-103)||(31600946-31600988)
chr4 (5-45)||(48781098-48781138)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-50)||(49132-49181)
[»] chr1 (4 HSPs)
chr1 (5-54)||(35594225-35594274)
chr1 (61-125)||(44411904-44411969)
chr1 (5-45)||(11436050-11436090)
chr1 (63-103)||(14999381-14999421)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 213 - 394
Target Start/End: Original strand, 4271694 - 4271875
Alignment:
Q  213 aagattgcgaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 312  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271694 aagattgcgaggaagatttgaagggtttcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 4271793  T
Q  313 gaataattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttgat 394  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4271794 gaatgattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcgtgagcttgat 4271875  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 221 - 393
Target Start/End: Original strand, 42346596 - 42346771
Alignment:
Q  221 gaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaagaataa-- 318  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||| ||||||| ||||||      
T  42346596 gaggaagatttcaagggtttcacgaaaagtgaggttactgtgatagacacgagttgtccagtgtggaaagttgataagtttgtgttcagaaggaataatg 42346695  T
Q  319 -ttggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttga 393  Q
     ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  42346696 tttggaaaatcagagagaggaaacaaaagaacaagtttgtagcgaagaagaagagtaaatcgacccatgagcttga 42346771  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 4271538 - 4271603
Alignment:
Q  61 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 125  Q
    |||||||||||||| |||||||| ||||||||| |||||||| ||| |||||||||||||||||||    
T  4271538 tttgcaactttgatcctttttgtcaattttgaccggtcaatgtctatatgacacgccacatgtgta 4271603  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4271444 - 4271494
Alignment:
Q  1 aaattgcacttttccacctttaactttcaaaaatttgtaattttgacctct 51  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||| ||||    
T  4271444 aaattgtacttttctatctttaactttcaaaaatttgtaattttgatctct 4271494  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 54540793 - 54540751
Alignment:
Q  61 tttgcaactttgattctttttgttaattttgacaggtcaatgc 103  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  54540793 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 54540751  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 18979123 - 18979072
Alignment:
Q  61 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgac 111  Q
    |||||||||||||| |||||||  |||||||||||||||||| |||||||||    
T  18979123 tttgcaactttgatcctttttgccaattttgacaggtcaatgcctacatgac 18979072  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 42982750 - 42982710
Alignment:
Q  5 tgcacttttccacctttaactttcaaaaatttgtaattttg 45  Q
    ||||||||||||||||||| ||| ||||| |||||||||||    
T  42982750 tgcacttttccacctttaagttttaaaaagttgtaattttg 42982710  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 12382804 - 12382761
Alignment:
Q  5 tgcacttttccacctttaactttcaaaaatttgtaattttgacc 48  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  12382804 tgcacttttccacctctaatttttaaaaatttgtaattttgacc 12382761  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 36486491 - 36486449
Alignment:
Q  61 tttgcaactttgattctttttgttaattttgacaggtcaatgc 103  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  36486491 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 36486449  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 1797300 - 1797235
Alignment:
Q  61 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 125  Q
    |||||||||||||||| |||| | ||||||||| |||||||| |||  || |||||||||||||||    
T  1797300 tttgcaactttgattccttttttcaattttgaccggtcaatgcctatgtggcacgccacatgtgta 1797235  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 28538774 - 28538815
Alignment:
Q  61 tttgcaactttgattctttttgttaattttgacaggtcaatg 102  Q
    |||||||||||||| |||||||| ||||||||| ||||||||    
T  28538774 tttgcaactttgatcctttttgtcaattttgaccggtcaatg 28538815  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 31600988 - 31600946
Alignment:
Q  61 tttgcaactttgattctttttgttaattttgacaggtcaatgc 103  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  31600988 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 31600946  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 48781138 - 48781098
Alignment:
Q  5 tgcacttttccacctttaactttcaaaaatttgtaattttg 45  Q
    ||||||||||| ||| ||||||||||||||||| |||||||    
T  48781138 tgcacttttccccctctaactttcaaaaatttgcaattttg 48781098  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49181 - 49132
Alignment:
Q  1 aaattgcacttttccacctttaactttcaaaaatttgtaattttgacctc 50  Q
    |||||||||||||||||| |||||||| ||||| ||| ||||||| ||||    
T  49181 aaattgcacttttccacccttaacttttaaaaacttgcaattttggcctc 49132  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 35594225 - 35594274
Alignment:
Q  5 tgcacttttccacctttaactttcaaaaatttgtaattttgacctctaag 54  Q
    ||||||||||||||  ||||||||||||| ||| |||||||||| |||||    
T  35594225 tgcacttttccacccctaactttcaaaaacttgcaattttgacccctaag 35594274  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 44411969 - 44411904
Alignment:
Q  61 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 125  Q
    |||||||||||||| |||||||  ||||||||| |||||||| |||| || |||||||| ||||||    
T  44411969 tttgcaactttgatcctttttgccaattttgaccggtcaatgcctacgtggcacgccacgtgtgta 44411904  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 11436050 - 11436090
Alignment:
Q  5 tgcacttttccacctttaactttcaaaaatttgtaattttg 45  Q
    ||||||||||| ||||||||||||||||| ||| |||||||    
T  11436050 tgcacttttccccctttaactttcaaaaacttgcaattttg 11436090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 14999381 - 14999421
Alignment:
Q  63 tgcaactttgattctttttgttaattttgacaggtcaatgc 103  Q
    |||||||||||| |||||||| ||||||||| |||||||||    
T  14999381 tgcaactttgatcctttttgtcaattttgaccggtcaatgc 14999421  T

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