View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_high_19 (Length: 359)

Name: NF6993_high_19
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_high_19
NF6993_high_19
[»] chr2 (6 HSPs)
chr2 (17-324)||(1615758-1616066)
chr2 (121-293)||(18355260-18355434)
chr2 (121-294)||(23348927-23349102)
chr2 (121-278)||(12741703-12741862)
chr2 (134-293)||(10328851-10329013)
chr2 (90-220)||(24454588-24454720)
[»] chr8 (5 HSPs)
chr8 (90-293)||(27541475-27541679)
chr8 (121-293)||(14677968-14678142)
chr8 (121-293)||(5657771-5657945)
chr8 (121-293)||(31100819-31100993)
chr8 (250-293)||(23738657-23738700)
[»] scaffold0035 (1 HSPs)
scaffold0035 (121-295)||(35061-35237)
[»] chr7 (4 HSPs)
chr7 (121-294)||(1262087-1262262)
chr7 (121-294)||(48849754-48849929)
chr7 (121-298)||(43071329-43071508)
chr7 (121-294)||(26909928-26910103)
[»] chr5 (6 HSPs)
chr5 (121-293)||(22009475-22009649)
chr5 (121-295)||(9043800-9043976)
chr5 (121-293)||(7473436-7473610)
chr5 (121-292)||(30442494-30442667)
chr5 (215-293)||(19085420-19085498)
chr5 (198-278)||(26840989-26841070)
[»] chr3 (11 HSPs)
chr3 (121-294)||(31685076-31685251)
chr3 (121-293)||(53973233-53973407)
chr3 (118-293)||(17681767-17681944)
chr3 (121-278)||(19882058-19882217)
chr3 (121-294)||(37982348-37982523)
chr3 (156-293)||(12538618-12538756)
chr3 (152-293)||(2549937-2550079)
chr3 (154-294)||(24761878-24762020)
chr3 (154-293)||(24815915-24816056)
chr3 (154-206)||(53027732-53027785)
chr3 (154-293)||(53352741-53352882)
[»] chr4 (2 HSPs)
chr4 (125-293)||(29863312-29863482)
chr4 (250-294)||(12506435-12506479)
[»] chr6 (8 HSPs)
chr6 (121-278)||(33045378-33045537)
chr6 (170-293)||(10092512-10092636)
chr6 (183-294)||(3065697-3065808)
chr6 (158-278)||(8976419-8976541)
chr6 (215-294)||(16246701-16246780)
chr6 (116-152)||(10092641-10092677)
chr6 (215-278)||(30908412-30908475)
chr6 (250-292)||(4660253-4660295)
[»] scaffold0045 (1 HSPs)
scaffold0045 (121-293)||(11581-11755)
[»] scaffold0596 (1 HSPs)
scaffold0596 (121-293)||(654-828)
[»] scaffold0096 (1 HSPs)
scaffold0096 (142-294)||(27409-27563)
[»] scaffold0157 (1 HSPs)
scaffold0157 (250-294)||(13998-14042)
[»] chr1 (1 HSPs)
chr1 (215-289)||(50990911-50990985)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 1615758 - 1616066
Alignment:
Q  17 aaaagccgctaagctgcaactggattaagtggagacgaatcaaaacccaagaaaaaaccatttaggtgtatatttacactataagctatattggaatttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615758 aaaagccgctaagctgcaactggattaagtggagacgaatcaaaacccaagaaaaaaccatttaggtgtatatttacactataagctatattggaatttg 1615857  T
Q  117 gtgtataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctccctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  1615858 gtgtataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaaggatgagatgcatgcttagccaaatgatgcgatccaacgatctccctt 1615957  T
Q  216 gtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattgaatactgtaacataacatcg 315  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  1615958 gtttggagcaaaaaccatttagatttaatggttacaaagtcattaacaatgttaacaaagattggatataaggatgattgaatactgtaacataacatcg 1616057  T
Q  316 taaccatga 324  Q
    |||||||||    
T  1616058 taaccatga 1616066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 18355260 - 18355434
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||    
T  18355260 ataggaaatatacatcaaatttgaaaatttgactcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacgacctcccttgttt 18355359  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || ||| |||||||||||||||||  | || |||  |||||| ||||||||||||||||| ||||||||||||||    
T  18355360 tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattaaatataagtatgat 18355434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 121 - 294
Target Start/End: Original strand, 23348927 - 23349102
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| ||    
T  23348927 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt 23349026  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    || ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  ||||||||||||||    
T  23349027 tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgatt 23349102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 121 - 278
Target Start/End: Complemental strand, 12741862 - 12741703
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||| ||| ||    
T  12741862 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcctttgttt 12741763  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt 278  Q
    || ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||    
T  12741762 tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagatt 12741703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 134 - 293
Target Start/End: Original strand, 10328851 - 10329013
Alignment:
Q  134 atcaaatttgaaagtttgactcaaattagatcaaa--gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgtttga-agcaaaaac 230  Q
    |||||||||  || ||||||||| |||||||||||  ||||||||||||| |||||||||||||| ||||||||| |||||||||||| | | | |||||    
T  10328851 atcaaattttcaaatttgactcagattagatcaaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttagaaccaaaac 10328950  T
Q  231 catttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
     |||||||||||  | || |||  |||||| |||||||||||||||||  |||||||||||||    
T  10328951 aatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 10329013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 24454720 - 24454588
Alignment:
Q  90 ttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaaagtttg-actcaaattagatcaaa-gatgagatgcatgtttagc 187  Q
    |||||||||||||||||| |||||| |||| |||||||| | |||||||||||||||||||| | ||| ||||||||||| ||||||||| ||||  |||    
T  24454720 ttacactataagctatatgggaattcggtgcataggaaaaagacatcaaatttgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagc 24454621  T
Q  188 caaatgatgcgatccaacgacctcccttgtttg 220  Q
    ||||||||| ||||||||| ||  |||||||||    
T  24454620 caaatgatgagatccaacggccctccttgtttg 24454588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 90 - 293
Target Start/End: Original strand, 27541475 - 27541679
Alignment:
Q  90 ttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag-atgagatgcatgtttagcc 188  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||    
T  27541475 ttacactataagctatatgggaatttggtgcataggaaatatacatcaaatttgaaagtttgattcagattagatcaaaggatgagatgcatgcttagcc 27541574  T
Q  189 aaatgatgcgatccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagt 288  Q
    |||||||| ||||||||| | ||||||||||| ||| ||| |||||||||||||  | || ||||||||||| |||||||||||||||||  ||||||||    
T  27541575 aaatgatgagatccaacggcgtcccttgtttggagccaaagccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagt 27541674  T
Q  289 atgat 293  Q
    |||||    
T  27541675 atgat 27541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 14677968 - 14678142
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| ||    
T  14677968 ataggaaatatacattaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt 14678067  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||  |||||||||||||    
T  14678068 tggagccaaaaccatttaggtttagggttttcaaagtcattagcaatgttaacaaagattagatataagtatgat 14678142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 121 - 293
Target Start/End: Complemental strand, 5657945 - 5657771
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||| ||||||||| ||||||||| ||    
T  5657945 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttt 5657846  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || ||| ||||| |||||||||||  | || ||||||||||| ||| |||||||||||||  |||||||||||||    
T  5657845 tggagccaaaactatttaggtttagggtttgcaaagtcattagcaacgttaacaaagattagatataagtatgat 5657771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 31100819 - 31100993
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||| |||||||||| |||| |||| ||||||||| ||    
T  31100819 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctcccttgttt 31100918  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || ||| |||||||||||||||||    || ||||||||||| |||||||||||||||||  |||||||||||||    
T  31100919 tggagccaaaaccatttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 31100993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 23738700 - 23738657
Alignment:
Q  250 caaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    ||||||||||| |||||||||||||||||  |||||||||||||    
T  23738700 caaagtcattagcaatgttaacaaagattagatataagtatgat 23738657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 121 - 295
Target Start/End: Complemental strand, 35237 - 35061
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||| |||||||||| ||    
T  35237 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaacctcccttgttt 35138  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattg 295  Q
    || ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||  |||||||||||||||    
T  35137 tggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgattg 35061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 121 - 294
Target Start/End: Complemental strand, 1262262 - 1262087
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| | ||||||| ||    
T  1262262 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttt 1262163  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    || ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||  ||||||||||||||    
T  1262162 tggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgatt 1262087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 121 - 294
Target Start/End: Original strand, 48849754 - 48849929
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||| |  ||||||| ||    
T  48849754 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaaaatcccttgttt 48849853  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    || ||| |||||||||||||||||    |||||||||||||| |||||||||||||||||  ||||||||||||||    
T  48849854 tggagccaaaaccatttaggtttaggatttacaaagtcattagcaatgttaacaaagattagatataagtatgatt 48849929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 43071329 - 43071508
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| ||    
T  43071329 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt 43071428  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattgaat 298  Q
    || ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  ||||||||||||| ||||    
T  43071429 tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgatagaat 43071508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 121 - 294
Target Start/End: Original strand, 26909928 - 26910103
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||  ||||||| |  |||||||| ||    
T  26909928 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttt 26910027  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    || ||| ||| |||||||||||||  | || |||||| |||| |||||||||||||||||  ||||||||||||||    
T  26910028 tggagccaaatccatttaggtttagggtttgcaaagttattagcaatgttaacaaagattagatataagtatgatt 26910103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 22009475 - 22009649
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| ||    
T  22009475 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt 22009574  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || ||| |||||||||||||||||  | || |||| |||||| |||||||||||||||||  |||||||||||||    
T  22009575 tggagccaaaaccatttaggtttagggtttgcaaattcattagcaatgttaacaaagattagatataagtatgat 22009649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 121 - 295
Target Start/End: Complemental strand, 9043976 - 9043800
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||| ||    
T  9043976 ataggaaatatacatcaaatttaaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt 9043877  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattg 295  Q
    || ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  |||||||||||||||    
T  9043876 tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgattg 9043800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 7473436 - 7473610
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||| |||||||| ||||||||| ||||||||| ||    
T  7473436 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttt 7473535  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  |||||||||||||    
T  7473536 tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 7473610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 121 - 292
Target Start/End: Original strand, 30442494 - 30442667
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| ||    
T  30442494 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt 30442593  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatga 292  Q
    || ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  ||||||| ||||    
T  30442594 tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagcatga 30442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 19085420 - 19085498
Alignment:
Q  215 tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    |||||| ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||  |||||||||||||    
T  19085420 tgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatgat 19085498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 26840989 - 26841070
Alignment:
Q  198 gatccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt 278  Q
    |||||||||  ||||||||||| | ||| |||||||||||||||||  | || |||| |||||| |||||||||||||||||    
T  26840989 gatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaacaaagatt 26841070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 121 - 294
Target Start/End: Complemental strand, 31685251 - 31685076
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctccctt-gtt 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||| ||||| ||||||||  ||    
T  31685251 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagattcaacggcctcccttattt 31685152  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    || ||| |||||||||||||||||  | || ||||||||||| ||||||||| |||||||  ||||||||||||||    
T  31685151 tggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaagattagatataagtatgatt 31685076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 53973233 - 53973407
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| | |||||||||||||| ||||||||| ||||||||| ||    
T  53973233 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatt 53973332  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  |||||||||||||    
T  53973333 tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 53973407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 118 - 293
Target Start/End: Complemental strand, 17681944 - 17681767
Alignment:
Q  118 tgtataggaaatatacatcaaatttgaaagtttgactcaa-attagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctccctt 215  Q
    ||||| |||||||||||| |||||| ||| |||||||||| |||||||||||| |||||||||||| ||| |||||||||| ||||||||| || |||||    
T  17681944 tgtatgggaaatatacattaaatttaaaaatttgactcaagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcccccctt 17681845  T
Q  216 gtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    ||||| ||| |||||||||||||||||  | || |||| ||||||||||||||||||||||||  |||||||||||||    
T  17681844 gtttggagccaaaaccatttaggtttagggtttgcaaaatcattaacaatgttaacaaagattagatataagtatgat 17681767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 121 - 278
Target Start/End: Original strand, 19882058 - 19882217
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||||  |||||||| ||    
T  19882058 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttt 19882157  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt 278  Q
    || ||| |||||||||||||||||  | ||||||  |||||| |||||||||||||||||    
T  19882158 tggagccaaaaccatttaggtttagggtttacaatttcattagcaatgttaacaaagatt 19882217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 121 - 294
Target Start/End: Complemental strand, 37982523 - 37982348
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||| |||||||||||||| |||||||||  |||||||| ||    
T  37982523 ataggaaatatacatcaaatttgaaaatttgactcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttt 37982424  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    || ||| |||||||||||||||||  | || |||  |||||| |||||||||||||||||  ||||||||||||||    
T  37982423 tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgatt 37982348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 156 - 293
Target Start/End: Original strand, 12538618 - 12538756
Alignment:
Q  156 aaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaag 254  Q
    |||||||||||||| ||| |||||||| |||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||  | || ||||     
T  12538618 aaattagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaa 12538717  T
Q  255 tcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    ||||||  || |||||||||||||  |||||||||||||    
T  12538718 tcattagaaaggttaacaaagattagatataagtatgat 12538756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 152 - 293
Target Start/End: Complemental strand, 2550079 - 2549937
Alignment:
Q  152 actcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggtta 249  Q
    ||||| |||| ||||||| |||||||||||| |||||||||||||  ||||||||| |||||||||||| | ||| |||| ||||||||||||  | ||     
T  2550079 actcagattaaatcaaaggatgagatgcatgcttagccaaatgata-gatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttg 2549981  T
Q  250 caaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    ||||||||||| |||||||||  ||||||  |||||||||||||    
T  2549980 caaagtcattagcaatgttaattaagattagatataagtatgat 2549937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 294
Target Start/End: Original strand, 24761878 - 24762020
Alignment:
Q  154 tcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tttgaagcaaaaaccatttaggtttaatggttaca 251  Q
    |||||||||||||||| |||||||||||| | |||||||||||| |||||||||  |  | ||| |||| ||| |||||||||||||||||  | || ||    
T  24761878 tcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttaggtttagggtttgca 24761977  T
Q  252 aagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    ||||||||| ||||||||| || ||||  ||||||||||||||    
T  24761978 aagtcattagcaatgttaagaaggattagatataagtatgatt 24762020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 293
Target Start/End: Complemental strand, 24816056 - 24815915
Alignment:
Q  154 tcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tttgaagcaaaaaccatttaggtttaatggttaca 251  Q
    |||||||||||||||| |||||||||||| | |||||||||||| ||||||||| ||  | | | |||| ||| |||||||||||||||||  | || ||    
T  24816056 tcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaaaaccatttaggtttagggtttgca 24815957  T
Q  252 aagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    ||||||||| ||||||||| || ||||  |||||||||||||    
T  24815956 aagtcattagcaatgttaagaaggattagatataagtatgat 24815915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 53027732 - 53027785
Alignment:
Q  154 tcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacg 206  Q
    |||||||||||||||| |||||||||||| | |||||||||||| |||||||||    
T  53027732 tcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacg 53027785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 293
Target Start/End: Original strand, 53352741 - 53352882
Alignment:
Q  154 tcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttaca 251  Q
    |||||||| ||||||| ||||||||||   | |||||||||||| |||||||||  |  | | |||| | ||| |||||| ||||||||||  | || ||    
T  53352741 tcaaattaaatcaaaggatgagatgcacactgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccgtttaggtttagagtttgca 53352840  T
Q  252 aagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    ||||||||| ||||||||| || ||||  |||||||||||||    
T  53352841 aagtcattagcaatgttaagaaggattagatataagtatgat 53352882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 125 - 293
Target Start/End: Original strand, 29863312 - 29863482
Alignment:
Q  125 gaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tttgaa 222  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||| ||||||||| ||||||||| |||| |    
T  29863312 gaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacggcctcccttgttttgga 29863411  T
Q  223 gcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || |||||||||||||||||  | || ||||||||| | |||||||||||||||||  |||||||||||||    
T  29863412 gccaaaaccatttaggtttacggtttgcaaagtcatgagcaatgttaacaaagattagatataagtatgat 29863482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 12506479 - 12506435
Alignment:
Q  250 caaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||    
T  12506479 caaagtcattagcaatgttaacaaagattagatataagtatgatt 12506435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 121 - 278
Target Start/End: Original strand, 33045378 - 33045537
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctccctt-gtt 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||| ||||||||| ||||||||  ||    
T  33045378 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttattt 33045477  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt 278  Q
    || ||| |||||||||||||||||  | || ||||||||||| |||||||||||||||||    
T  33045478 tggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagatt 33045537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 10092636 - 10092512
Alignment:
Q  170 atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgtt 268  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||| | ||| |||||||||||| ||||  | || |||||||||||||||||||    
T  10092636 atgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagggtttgcaaagtcattaacaatgtt 10092537  T
Q  269 aacaaagattgaatataagtatgat 293  Q
    ||||||||||  |||||||||||||    
T  10092536 aacaaagattagatataagtatgat 10092512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 3065808 - 3065697
Alignment:
Q  183 ttagccaaatgatgcgatccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaat 282  Q
    |||||||||||||| |||||||||  |||||||||||| ||| |||||||||||||||||  | || ||||||||||| | |||||||||||||||  ||    
T  3065808 ttagccaaatgatgagatccaacggtctcccttgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaaagattagat 3065709  T
Q  283 ataagtatgatt 294  Q
    ||||||||||||    
T  3065708 ataagtatgatt 3065697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 278
Target Start/End: Complemental strand, 8976541 - 8976419
Alignment:
Q  158 attagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctccctt-gtttgaagcaaaaaccatttaggtttaatggttacaaagt 255  Q
    |||||||||||| |||||||||||||||||| |||| ||| |||||||||  |||||||  |||| ||| |||||||||||||||||  | ||  |||||    
T  8976541 attagatcaaaggatgagatgcatgtttagctaaataatgagatccaacggtctcccttattttggagccaaaaccatttaggtttagagtttgtaaagt 8976442  T
Q  256 cattaacaatgttaacaaagatt 278  Q
    ||||| |||| ||||||||||||    
T  8976441 cattagcaatattaacaaagatt 8976419  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 294
Target Start/End: Complemental strand, 16246780 - 16246701
Alignment:
Q  215 tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    |||||| ||| ||||||||||||| |||  | || ||||||||||| ||||||| |||||||||  ||||||||||||||    
T  16246780 tgtttggagccaaaaccatttaggattagggtttgcaaagtcattagcaatgttcacaaagattagatataagtatgatt 16246701  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 10092677 - 10092641
Alignment:
Q  116 ggtgtataggaaatatacatcaaatttgaaagtttga 152  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10092677 ggtgcataggaaatatacatcaaatttgaaagtttga 10092641  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 30908412 - 30908475
Alignment:
Q  215 tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt 278  Q
    |||||| ||| |||||||||||| ||||  | || ||||||||||| |||||||||||||||||    
T  30908412 tgtttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaacaaagatt 30908475  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 4660253 - 4660295
Alignment:
Q  250 caaagtcattaacaatgttaacaaagattgaatataagtatga 292  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  4660253 caaagtcattagcaatgttaacaaagattatatataagtatga 4660295  T

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Target: scaffold0045 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 11581 - 11755
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt 218  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||| |||||||||| ||||||||| ||||||||| ||    
T  11581 ataggaaatatacatcaaatttgaaagtttgactcagattaaatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttt 11680  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || ||  ||||||| |||||||||  | || ||||||||||| |||||||||||||||||  |||||||||||||    
T  11681 tggagtcaaaaccagttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 11755  T

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Target: scaffold0596 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 121 - 293
Target Start/End: Complemental strand, 828 - 654
Alignment:
Q  121 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctccctt-gtt 218  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||  ||    
T  828 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttattt 729  T
Q  219 tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat 293  Q
    || ||  |||||||||||||||||  | || |||  |||||| ||||||||||||||||   |||||||||||||    
T  728 tggagtcaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagatcagatataagtatgat 654  T

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Target: scaffold0096 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 142 - 294
Target Start/End: Complemental strand, 27563 - 27409
Alignment:
Q  142 tgaaagtttgac-tcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgtttgaagcaaaaaccatttaggt 239  Q
    |||||||||||  |||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||    
T  27563 tgaaagtttgaagtcaaattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccatttaggt 27464  T
Q  240 ttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    |||  | || |||| |||||| |||||||||||||||||  ||||||||||||||    
T  27463 ttagggtttgcaaaatcattagcaatgttaacaaagattagatataagtatgatt 27409  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 13998 - 14042
Alignment:
Q  250 caaagtcattaacaatgttaacaaagattgaatataagtatgatt 294  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||    
T  13998 caaagtcattagcaatgttaacaaagattagatataagtatgatt 14042  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 50990985 - 50990911
Alignment:
Q  215 tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagta 289  Q
    |||||| ||| |||||||||||||||||  | || |||||| || | |||||||||||||||||  |||||||||    
T  50990985 tgtttggagccaaaaccatttaggtttagggtttgcaaagttatcagcaatgttaacaaagattagatataagta 50990911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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