View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6993_high_21 (Length: 337)
Name: NF6993_high_21
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21840080 - 21840321
Alignment:
| Q |
1 |
tcacatctcattcttgtcaccttcagctaacattccaaaaatcaaatcaactttcaatctcaacccttcaatccatatcattccccttcacgtctcagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21840080 |
tcacatctcattcttgtcaccttcagctaacattccaaaaatcaaatcaactttcaatctcaacccttcaatccatatcattccccttcacgtctcagat |
21840179 |
T |
|
| Q |
101 |
aacttaccaagtaacacttctaatttgcactcagacatgtttggcacactcattcaagcaatagactcaatgcaagatcatgtaaaaaccattttgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21840180 |
aacttaccaagtaacacttctaatttgcactcaggcatgtttggcacactcattcaagcaatagactcaatgcaagatcatgtaaaaaccattttgtttg |
21840279 |
T |
|
| Q |
201 |
aacttaaacctaattttattttctttgacattgcaacaagtt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21840280 |
aacttaaacctaattttattttctttgacattgcaacaagtt |
21840321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 331
Target Start/End: Original strand, 21875268 - 21875356
Alignment:
| Q |
243 |
ggatcccagaaatagcttctgaacttggcataaaatctgtttacttctcggtctactcagccatttcagcttcttactgatgtccatct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21875268 |
ggatcccagaaatagcttctgaacttggcataaaatctgtttacttctcggtctactcagccatttcagcttcttacttatgtccatct |
21875356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University