View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6993_high_29 (Length: 319)
Name: NF6993_high_29
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_high_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 53184948 - 53184661
Alignment:
| Q |
1 |
aaaaagaaatgttagaattcaatatcttatactcctcctatacaactaaatctctccaccaaatccacccttactcggactccgttactattaacgatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53184948 |
aaaaagaaatgttagaattcaatatcttatactcctcctatacaactaaacctctccaccaaatccacccttactcggactccgttactattaaccatat |
53184849 |
T |
|
| Q |
101 |
ccttcacacagatatagatatttgtatcaatcactgaattaaataatcactatggtctatgaatatgatggacccttcagaaccccctccaacgaaggtt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53184848 |
ccttcacacagatat------ttgtatcaatcactgaattaaataatcactatg-------aatatgatggacccttcagaaccccctccaacgaaggtt |
53184762 |
T |
|
| Q |
201 |
cataccaaacacagtggtacacttatttccaatcttcttagacacattttaataaaccacctcccttagcttacctcatctcccatttctgtgctataaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53184761 |
cataccaaacacagtggtacacttatttccaatcttcttagacacattttaataaaccacctcccttagcttacctcatctcccatttctatgctataaa |
53184662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University