View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_high_30 (Length: 318)
Name: NF6993_high_30
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 6915898 - 6916192
Alignment:
| Q |
1 |
atttatgttaaatgcattaagatcgagtatggtgttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttg |
100 |
Q |
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| T |
6915898 |
atttatgttaaacgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttg |
6915997 |
T |
|
| Q |
101 |
attatttacataagaagcaatctggaggacaaggacaatatggacgagtgattggatatattgaaccacttcctgctgggtcaggaactaagtttgaatt |
200 |
Q |
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| T |
6915998 |
attatttacataagaagcaatctggagggcaaggacaatatggacgagtgattggatatattgaaccacttcctgctgggtcaggaactaagtttgaatt |
6916097 |
T |
|
| Q |
201 |
tgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaagaagctgccaactctggtgccttgattg |
295 |
Q |
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| T |
6916098 |
tgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaagaagctgccaactctggtgccttgattg |
6916192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 15039390 - 15039269
Alignment:
| Q |
34 |
gttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaag |
133 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
15039390 |
gttgatgctacagttggaaagccccgtgtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatccggagggcaag |
15039291 |
T |
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| Q |
134 |
gacaatatggacgagtgattgg |
155 |
Q |
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| T |
15039290 |
gacaatatggacgggtgattgg |
15039269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 15038438 - 15038314
Alignment:
| Q |
157 |
tatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgaga |
256 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
15038438 |
tatattgaaccactccctgctgggtcagaaactaagtttgaatttgaaaacatgcttgttggtcaagctattccatcaaattttttcgctgcaattgaga |
15038339 |
T |
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| Q |
257 |
aaggttttaaagaagctgccaactc |
281 |
Q |
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||||||||| ||||||||||||||| |
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| T |
15038338 |
aaggttttatagaagctgccaactc |
15038314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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