View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_high_33 (Length: 313)
Name: NF6993_high_33
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 15307998 - 15307704
Alignment:
| Q |
1 |
gaaagcttctccagcatcaaatgttggagctccccaacggaaaggaattggagcgctaatcctggttaatatattttatcaaaataaatagttaggaatt |
100 |
Q |
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| T |
15307998 |
gaaagcttctccagcatcaaatgttggagctccccaacggaaaggaattggagggctaatcctggttaatatattttatcaaaataaatagttaggaatt |
15307899 |
T |
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| Q |
101 |
aaccaaaactgaatccatttttctagtcattaaagatatagaaaataacaagtttcatcgaccgtgttctctaaaatataccactacctaaagtacggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15307898 |
aaccaaaactgaatccatttttctagtcattaaagatatagaaaataacaagtttaatcgaccgtgttctctaaaatataccactacctaaagtacggaa |
15307799 |
T |
|
| Q |
201 |
taaacattcacaagactcttaccaagatgcaccatgtatgagtccagcacggtcagttctgcaagtatcctgagtctcatgttgtgcgtttttat |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15307798 |
taaacattcacaagactcttaccaagatgcaccatgtatgagtccagcacggtcagttctgcaagtatcctgagtctcatgttctgcgtttttat |
15307704 |
T |
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