View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_high_35 (Length: 306)

Name: NF6993_high_35
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_high_35
NF6993_high_35
[»] chr6 (16 HSPs)
chr6 (20-294)||(5261792-5262066)
chr6 (20-294)||(5285789-5286046)
chr6 (32-296)||(5445174-5445438)
chr6 (31-252)||(5148647-5148871)
chr6 (26-244)||(5183648-5183869)
chr6 (31-263)||(5423843-5424078)
chr6 (26-250)||(5395128-5395355)
chr6 (24-136)||(5104679-5104791)
chr6 (39-252)||(5075419-5075635)
chr6 (196-266)||(5104546-5104616)
chr6 (196-255)||(5159186-5159245)
chr6 (197-255)||(5094300-5094358)
chr6 (204-262)||(5356294-5356352)
chr6 (31-130)||(5133718-5133817)
chr6 (20-143)||(5356416-5356539)
chr6 (24-132)||(5348494-5348602)
[»] chr2 (1 HSPs)
chr2 (31-247)||(22586014-22586230)
[»] chr7 (1 HSPs)
chr7 (31-239)||(36215593-36215804)
[»] chr4 (9 HSPs)
chr4 (31-252)||(4322790-4323014)
chr4 (45-244)||(25568096-25568298)
chr4 (20-252)||(4126125-4126360)
chr4 (43-239)||(4351331-4351530)
chr4 (31-263)||(4333642-4333877)
chr4 (31-225)||(4358500-4358697)
chr4 (36-149)||(6750920-6751033)
chr4 (31-143)||(6713879-6713991)
chr4 (71-143)||(6834282-6834354)
[»] scaffold0294 (1 HSPs)
scaffold0294 (33-136)||(10475-10578)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 5262066 - 5261792
Alignment:
Q  20 actttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagt 119  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||| | ||| ||||||||| |||||||||||||||||||||||||| |||||     
T  5262066 actttgccataaaagagtacttattgtacttgatgatgtgaatacactagacaaaccgaatactttgtgtggaagtcgtgaatggtttggctcagggagc 5261967  T
Q  120 gtaataatcatcacaactagagatttggatttactttcaggtagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagcttt 219  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  5261966 gtaataatcatcacaactagagatctggatttaatttcagggagagttgacaaaatatacaaaatgacaacaatgaatgaaaatgaatcaattgagcttt 5261867  T
Q  220 ttagttagaatgcattcaaggaagcgagtcctacaagagattttattagagttgccgaaaatgcagttgaatatt 294  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||| || || || |||||| |||||||||||    
T  5261866 ttagttggaatgcattcaagaaagcgagtcctacaagagattttattggatttaccaaaaatgtagttgaatatt 5261792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 5286046 - 5285789
Alignment:
Q  20 actttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagt 119  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||     
T  5286046 actttgccataaaagagtacttattgtacttgatgatgtgaatacactagaccaactgaatactttctgtggaagtcgtgaatggtttggctcagggagc 5285947  T
Q  120 gtaataatcatcacaactagagatttggatttactttcaggtagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagcttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||    
T  5285946 gtaataatcatcacaactagagatttggatttactttcagggagagttgacaaaatatacaatatgacaacgatgaatgaaagtgaatcaattgagcttt 5285847  T
Q  220 ttagttagaatgcattcaaggaagcgagtcctacaagagattttattagagttgccgaaaatgcagttgaatatt 294  Q
    |||                 |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  5285846 tta-----------------gaagtgagtcctacaagagattttattagagttaccgaaaatgtagttgaatatt 5285789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 296
Target Start/End: Original strand, 5445174 - 5445438
Alignment:
Q  32 aagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatc 131  Q
    |||||||||| |||||||||||||||||| |||| ||| |||||| |||||||| |||| ||||||||||||||||||||| |||||| ||||||| |||    
T  5445174 aagagtacttgttgtacttgatgatgtgaatacattagaccaacttaatactttctgtgcaagtcgtgaatggtttggctcagggagtataataataatc 5445273  T
Q  132 acaactagagatttggatttactttcaggtagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatg 231  Q
    ||||| |||||| || ||||||||  ||| |||||||| ||||| | | ||||| ||| |||||||||||| || ||||| ||||||||||||| |||||    
T  5445274 acaaccagagatatgcatttacttaaagggagagttgacaaaatattcgaaatgccaataatgaatgaaagtgagtcaatcgagctttttagttggaatg 5445373  T
Q  232 cattcaaggaagcgagtcctacaagagattttattagagttgccgaaaatgcagttgaatattct 296  Q
    ||||||||  |||| ||||||||| ||||||| ||||| || || |||||| |||||||||||||    
T  5445374 cattcaagcgagcgtgtcctacaaaagattttgttagaatttccaaaaatgtagttgaatattct 5445438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 5148871 - 5148647
Alignment:
Q  31 aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat 130  Q
    ||||||||||| ||||||||||||||||||||||  | |  ||| ||| | |||| |||||||||||| ||||||||||||| || |||  |||||| ||    
T  5148871 aaagagtacttcttgtacttgatgatgtgagtacgttggatcaattgactgctttgtgtggaagtcgtcaatggtttggctcgggaagtagaataattat 5148772  T
Q  131 cacaactagagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttag 227  Q
    ||||||||||||| || || ||||   |||   |||||||||  |  | |||||||||| |  |||| ||||| | |||||||||  ||||||||||| |    
T  5148771 cacaactagagatatgcatatactgagagggaatagagttgaccatgtatacaaaatgaaagaaatggatgaaggtgaatcaattatgctttttagttgg 5148672  T
Q  228 aatgcattcaaggaagcgagtccta 252  Q
     ||||||||||| ||||||||||||    
T  5148671 catgcattcaagcaagcgagtccta 5148647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 26 - 244
Target Start/End: Complemental strand, 5183869 - 5183648
Alignment:
Q  26 ccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaata 125  Q
    |||| ||||||||||| | |||||||||||||||| |||| | | |||||||||| |||| ||||||||  ||   ||| ||||  | |||||   ||||    
T  5183869 ccataaaagagtacttctggtacttgatgatgtgaatacatttgaccaactgaatgctttgtgtggaaggagtatttggcttggtccagggagcagaata 5183770  T
Q  126 atcatcacaactagagatttggatttactttcaggta---gagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagcttttta 222  Q
    ||||||||||||||| || || |  |||||  |||||   |||||||  || |||||||||||| || |||| ||||||| |||||||||||||| ||||    
T  5183769 atcatcacaactagaaatatgaaaatacttagaggtaatagagttgaccaagtttacaaaatgaaaataatggatgaaagcgaatcaattgagctattta 5183670  T
Q  223 gttagaatgcattcaaggaagc 244  Q
    ||| | ||||||||||| ||||    
T  5183669 gttggcatgcattcaagcaagc 5183648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 263
Target Start/End: Original strand, 5423843 - 5424078
Alignment:
Q  31 aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat 130  Q
    |||||||||| ||| |||||||||| || | |||| | | |||||||||| |||| |||||||||| | |||||||||| || ||||||  |||||| ||    
T  5423843 aaagagtactaattttacttgatgacgttaatacattggaccaactgaatgctttgtgtggaagtcataaatggtttggttcggggagtagaataattat 5423942  T
Q  131 cacaactagagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaaca-atgaatgaaagagaatcaattgagctttttagtta 226  Q
    |||||| ||||||    || ||||||  ||   ||| ||| ||||| | | |||||||| |||| ||| ||||||| |||||||||||||| || ||||     
T  5423943 cacaacaagagatagacatatactttgtgggaatagggttcataaagtattcaaaatga-aacacatggatgaaagtgaatcaattgagctattaagttg 5424041  T
Q  227 gaatgcattcaaggaagcgagtcctacaagagatttt 263  Q
    | |||| |||||| ||||||||||||||| |||||||    
T  5424042 gcatgccttcaagcaagcgagtcctacaaaagatttt 5424078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 5395128 - 5395355
Alignment:
Q  26 ccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaata 125  Q
    |||| ||||||||||| |  ||||||||||||||| |||| | |  ||||| ||| | || |||||||||||| | ||| |||| || |||||   ||||    
T  5395128 ccataaaagagtacttctaatacttgatgatgtgaatacatttgaacaactaaatgcattgtgtggaagtcgtaattggcttggttcagggagcagaata 5395227  T
Q  126 atcatcacaactagagatttggatttactttcaggta---gagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagcttttta 222  Q
    |||||||||| ||||||| || |  |||||  |||||   |||||||  ||||||||||||||| |  |||| | | ||| |||||||||||||| ||||    
T  5395228 atcatcacaagtagagatatgaacatacttagaggtaatagagttgaccaaatttacaaaatgaaagaaatggacggaagcgaatcaattgagctcttta 5395327  T
Q  223 gttagaatgcattcaaggaagcgagtcc 250  Q
    ||| | ||||||||||| ||||||||||    
T  5395328 gttggcatgcattcaagcaagcgagtcc 5395355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 5104791 - 5104679
Alignment:
Q  24 tgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaa 123  Q
    |||||| |||||||| | ||||||||||||||||| | |||||| | ||||||| || |||| ||||||||| || |||||||||| || ||||||  ||    
T  5104791 tgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaa 5104692  T
Q  124 taatcatcacaac 136  Q
    ||||||| |||||    
T  5104691 taatcattacaac 5104679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 5075635 - 5075419
Alignment:
Q  39 cttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaacta 138  Q
    ||||||||||||||||||||||||  | | |  ||| ||||| |||| || |||| |||| ||||| || | || ||||||  |||||| |||||||| |    
T  5075635 cttattgtacttgatgatgtgagtgaattggagcaattgaatgctttgtgcggaaatcgtaaatggcttagttcagggagtagaataattatcacaacca 5075536  T
Q  139 gagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcatt 235  Q
    | ||| || || |||||  |||   |||||||||  || | | |||||||| |  |||| ||||||| |||||||||||||||||||||| | |||||||    
T  5075535 gggatatgcatatacttagagggaatagagttgaccaagtgtgcaaaatgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcatt 5075436  T
Q  236 caaggaagcgagtccta 252  Q
    |||  |||| |||||||    
T  5075435 caaacaagcaagtccta 5075419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 5104616 - 5104546
Alignment:
Q  196 atgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaagagattttatt 266  Q
    ||||||| |||||||||||||| ||||||| | ||||||||||| ||| |||||| |||| ||||||||||    
T  5104616 atgaaagtgaatcaattgagctatttagttggcatgcattcaagcaagtgagtccgacaaaagattttatt 5104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 5159245 - 5159186
Alignment:
Q  196 atgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaa 255  Q
    ||||||| |||||||||||||| ||||||| | | ||||||||| |||||||||||||||    
T  5159245 atgaaagtgaatcaattgagctatttagttggcacgcattcaagcaagcgagtcctacaa 5159186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 5094300 - 5094358
Alignment:
Q  197 tgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaa 255  Q
    |||||| |||||||||||| | ||||||| | ||||||||||| |||||||||||||||    
T  5094300 tgaaagtgaatcaattgagttatttagttggcatgcattcaagcaagcgagtcctacaa 5094358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 5356352 - 5356294
Alignment:
Q  204 gaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaagagattt 262  Q
    |||||||||||||| ||||||| | ||||||||||| |||| |||||||||| ||||||    
T  5356352 gaatcaattgagctatttagttggcatgcattcaagcaagcaagtcctacaaaagattt 5356294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 5133817 - 5133718
Alignment:
Q  31 aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat 130  Q
    |||||||| | ||||||||||||||||| | ||| || |  ||| ||||| |||| ||||||||| || |||||||||| || ||||||  |||||||||    
T  5133817 aaagagtattaattgtacttgatgatgtaaatactctggaacaaatgaatgctttgtgtggaagtagtaaatggtttggttcagggagtcgaataatcat 5133718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 5356539 - 5356416
Alignment:
Q  20 actttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagt 119  Q
    |||||| ||| |||||||||| ||||||||||||||||| | |||  | | ||||||||||  ||| ||||| |||| | | |||||||| |  ||||||    
T  5356539 actttgtcataaaagagtactaattgtacttgatgatgttaatactttggaccaactgaatgttttgtgtggcagtcatcattggtttggtttggggagt 5356440  T
Q  120 gtaataatcatcacaactagagat 143  Q
      |||||| |||||||| ||||||    
T  5356439 agaataattatcacaacaagagat 5356416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 5348494 - 5348602
Alignment:
Q  24 tgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaa 123  Q
    |||||| |||||||||| ||||| ||||||||||| | |||| | | |||| | ||| |||| || |||||| || |||||||||| || ||||||  ||    
T  5348494 tgccataaaagagtactaattgttcttgatgatgttaatacattggaccaattaaatgctttgtgcggaagttgtaaatggtttggttcggggagtagaa 5348593  T
Q  124 taatcatca 132  Q
    | |||||||    
T  5348594 ttatcatca 5348602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 22586230 - 22586014
Alignment:
Q  31 aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat 130  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||    
T  22586230 aaagagtacttattgtacttgatgatgtgagtaccctagaccaactgaatactttatgtgcaagtcgtgaatggtttggcaaagggagtgtaataatcat 22586131  T
Q  131 cacaactagagatttggatttactttcaggtagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaat 230  Q
    |||||| |||||||||| ||||||   ||| |||||||| | ||| |||| |||||||  |||||||||||| || ||||||||||||||||||| ||||    
T  22586130 cacaacaagagatttggttttactcagagggagagttgacagaatatacataatgacagtaatgaatgaaagtgagtcaattgagctttttagttggaat 22586031  T
Q  231 gcattcaaggaagcgag 247  Q
    ||||||||| |||||||    
T  22586030 gcattcaagcaagcgag 22586014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 239
Target Start/End: Complemental strand, 36215804 - 36215593
Alignment:
Q  31 aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat 130  Q
    ||||||||||| ||||||||||||| ||||||||| | |  ||| | ||| |||| |||||||||||| ||||||||||    ||||||  |||||||||    
T  36215804 aaagagtacttcttgtacttgatgacgtgagtacattggatcaatttaatgctttgtgtggaagtcgtcaatggtttggtgtggggagtagaataatcat 36215705  T
Q  131 cacaactagagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttag 227  Q
    |||||||||||||  | || |||||  |||   |||||||||  || | |||  ||||| |  |||| ||||||| |||||||||||||||||||||| |    
T  36215704 cacaactagagataggcatatacttagagggaatagagttgaccaagtatacgcaatgaaagaaatggatgaaagtgaatcaattgagctttttagttgg 36215605  T
Q  228 aatgcattcaag 239  Q
     |||||||||||    
T  36215604 catgcattcaag 36215593  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 4323014 - 4322790
Alignment:
Q  31 aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat 130  Q
    ||||||||||| |||||||||| ||||||| || ||| | ||| || ||| |||| ||||||||| || |||||||||   | || |||  |||||||||    
T  4323014 aaagagtacttcttgtacttgacgatgtgaataaactggaccagctaaatgctttgtgtggaagttgtaaatggtttgctccaggtagtagaataatcat 4322915  T
Q  131 cacaactagagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttag 227  Q
    |||||||||||||  | || |||||  |||   ||| ||||| ||||| |||| ||||| |  |||| ||||||| |||||  ||||||||||||||| |    
T  4322914 cacaactagagataagcatatacttagaggaaatagggttgacaaaatatacataatgaaagaaatggatgaaagtgaatctcttgagctttttagttgg 4322815  T
Q  228 aatgcattcaaggaagcgagtccta 252  Q
     ||||||||||| ||||||| ||||    
T  4322814 catgcattcaagcaagcgaggccta 4322790  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 244
Target Start/End: Original strand, 25568096 - 25568298
Alignment:
Q  45 gtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatt 144  Q
    |||||||||||||||| |||| | |  ||| ||||| |||| |||||| ||||| |||||||||| || || |||  |||| ||||||| |||||||||     
T  25568096 gtacttgatgatgtgaatacattggatcaattgaatgctttgtgtggacgtcgtcaatggtttggttcgggtagtagaatagtcatcaccactagagata 25568195  T
Q  145 tggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaagga 241  Q
    || |  | |||  |||   |||||||||| |||| |||| ||||| |  ||||  |||||| |||||||||||||||||||| | | ||||||||||| |    
T  25568196 tgaacattcttagaggatatagagttgatcaaatatacacaatgaaagaaatgtgtgaaagtgaatcaattgagctttttagctggcatgcattcaagca 25568295  T
Q  242 agc 244  Q
    |||    
T  25568296 agc 25568298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 4126360 - 4126125
Alignment:
Q  20 actttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagt 119  Q
    |||||| ||| ||||||| ||| |||||||||| ||||||| || | | | |||||| ||| |||| ||||||||| || |||||||||   | ||||||    
T  4126360 actttgtcataaaagagttcttcttgtacttgacgatgtgaataaattggaccaactcaatgctttgtgtggaagttgtaaatggtttgctccagggagt 4126261  T
Q  120 gtaataatcatcacaactagagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagc 216  Q
      |||||||||||| || || |||  | || |||||  |||   ||||||||| ||||| |||| ||||| |  |||| ||||||| |||||  |||| |    
T  4126260 agaataatcatcacgaccagggataagcatatacttcgaggggatagagttgacaaaatatacataatgaaagaaatggatgaaagtgaatctcttgaac 4126161  T
Q  217 tttttagttagaatgcattcaaggaagcgagtccta 252  Q
    ||||||||| | |||| |||||| || |||||||||    
T  4126160 tttttagttggcatgctttcaagcaaacgagtccta 4126125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 4351331 - 4351530
Alignment:
Q  43 ttgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagaga 142  Q
    |||||||||| ||||||| || | | | |||||| |||||||| ||||||||| || |||||||||   ||||||||  ||||||||||||||| || ||    
T  4351331 ttgtacttgacgatgtgaataaattggaccaacttaatactttgtgtggaagttgtaaatggtttgctcctgggagtagaataatcatcacaaccaggga 4351430  T
Q  143 tttggatttactttcag---gtagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaag 239  Q
    | ||||| |||||  ||     | |||||| || || ||| |||||| |  |||||||||||| |||||  |||||| |||||||| | |||||||||||    
T  4351431 tatggatatacttagagcgaaaaaagttgacaagatatacgaaatgaaagaaatgaatgaaagtgaatctcttgagcgttttagttggcatgcattcaag 4351530  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 263
Target Start/End: Original strand, 4333642 - 4333877
Alignment:
Q  31 aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat 130  Q
    ||||||| |||||||||||||| ||||| | || | | | |||||| |||| | | |||||||||||| |||||||||   ||||||||  |||||||||    
T  4333642 aaagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaagtcgtaaatggtttgctcctgggagtagaataatcat 4333741  T
Q  131 cacaactagagatttggatttactttca---ggtagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttag 227  Q
     |||||||| |||  | || ||||   |   | ||||||||| ||||  |||  ||||| |  |||| ||||||| |||||  ||||||||||||||| |    
T  4333742 tacaactagggataagcatatactgagaagggatagagttgacaaaacatactcaatgaaagaaatggatgaaagtgaatctcttgagctttttagtttg 4333841  T
Q  228 aatgcattcaaggaagcgagtcctacaagagatttt 263  Q
     ||||||||||| || ||||||| |||  |||||||    
T  4333842 catgcattcaagcaaacgagtcccacagaagatttt 4333877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 225
Target Start/End: Original strand, 4358500 - 4358697
Alignment:
Q  31 aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat 130  Q
    |||||||||||||||||||||| ||||| | || | | | |||||| ||| |||| ||||||||| || |||||||||   | || |||  ||| |||||    
T  4358500 aaagagtacttattgtacttgacgatgtcaataaattggaccaactaaatgctttgtgtggaagttgtaaatggtttgctccaggaagtagaattatcat 4358599  T
Q  131 cacaactagagatttggatttactttcaggta---gagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagtt 225  Q
    ||||||||| |||  | || |||||  ||| |    |||||||||||| |||| ||||| |  |||| ||||||| |||||  |||||||||||||||    
T  4358600 cacaactagggataagcatatacttagagggaaacaagttgataaaatatacataatgaaagaaatggatgaaagtgaatctcttgagctttttagtt 4358697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 6750920 - 6751033
Alignment:
Q  36 gtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaa 135  Q
    |||||| |||| ||||||||||||| |  | | | |||||| ||  |||| |||||||| ||||||||||||||  | ||||||  ||||||||||||||    
T  6750920 gtacttcttgtgcttgatgatgtgaatgaattggaccaactaaaagctttgtgtggaagccgtgaatggtttggtccagggagtagaataatcatcacaa 6751019  T
Q  136 ctagagatttggat 149  Q
    | ||| || |||||    
T  6751020 caagaaatatggat 6751033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 6713879 - 6713991
Alignment:
Q  31 aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat 130  Q
    |||| |||||| |||| ||||||||||||| || ||| | |||||| ||  |||| |||||||| ||  ||||||||||  | ||||||  | |||||||    
T  6713879 aaagggtacttcttgtgcttgatgatgtgaataaactggaccaactaaaggctttgtgtggaagccgcaaatggtttggtccggggagtagagtaatcat 6713978  T
Q  131 cacaactagagat 143  Q
    |||||| ||||||    
T  6713979 cacaacaagagat 6713991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 6834282 - 6834354
Alignment:
Q  71 ccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagat 143  Q
    |||||| ||| |||| ||||||||||| ||||||||||| || || |||  |||||||||||| || ||||||    
T  6834282 ccaactaaatgctttgtgtggaagtcgcgaatggtttggttccggaagtagaataatcatcacgacaagagat 6834354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 10578 - 10475
Alignment:
Q  33 agagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatca 132  Q
    ||||||||| |||| ||||||||||||  ||   | | |||||| ||| |||| ||||||||||||||||||||||| || |||| |  ||||||||| |    
T  10578 agagtacttcttgttcttgatgatgtggatagtttggaccaactaaatgctttgtgtggaagtcgtgaatggtttggttcagggactagaataatcatta 10479  T
Q  133 caac 136  Q
    ||||    
T  10478 caac 10475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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