View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_high_41 (Length: 287)
Name: NF6993_high_41
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 29104349 - 29104066
Alignment:
| Q |
3 |
ttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgttaaatctcaagcatataatt |
102 |
Q |
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| T |
29104349 |
ttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaacagcagtcgttaaatctcaagcatataatt |
29104250 |
T |
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| Q |
103 |
cgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104249 |
cgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagt |
29104150 |
T |
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| Q |
203 |
tcattccctgacaaaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattcttcgacat |
286 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29104149 |
tcattccctgacagaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattctttgacat |
29104066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 29090088 - 29089805
Alignment:
| Q |
3 |
ttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgttaaatctcaagcatataatt |
102 |
Q |
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|||||||||||||| || ||||||||| ||||||| |||||| ||||||| |||||||| || ||||||| | | |||||||||||||||||||||| |
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| T |
29090088 |
ttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaatcgattttctctttcaattcaacctctggtgttaaatctcaagcatataatt |
29089989 |
T |
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| Q |
103 |
cgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagt |
202 |
Q |
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| T |
29089988 |
cacaacaaagactcgttgaatctgtaagaaatattttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgctggcgaatttcggcggtat |
29089889 |
T |
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| Q |
203 |
tcattccctgacaaaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattcttcgacat |
286 |
Q |
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||||||||| |||| | |||||||||| ||||| | | ||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
29089888 |
tcattcccttacaacgcaaacaatgcaatatcttaccaagcttacagattacagcaacgtgctttctgaaatattcttcgacat |
29089805 |
T |
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