View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_high_43 (Length: 262)

Name: NF6993_high_43
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_high_43
NF6993_high_43
[»] chr3 (11 HSPs)
chr3 (142-237)||(6935139-6935233)
chr3 (61-131)||(6939013-6939083)
chr3 (136-210)||(50302103-50302176)
chr3 (155-218)||(6525438-6525500)
chr3 (25-61)||(6526944-6526980)
chr3 (155-215)||(6799224-6799283)
chr3 (155-218)||(6410638-6410700)
chr3 (25-64)||(6558187-6558226)
chr3 (22-61)||(6789001-6789040)
chr3 (90-131)||(6549838-6549879)
chr3 (32-61)||(6848532-6848561)
[»] scaffold0425 (1 HSPs)
scaffold0425 (25-61)||(11651-11687)


Alignment Details
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 6935233 - 6935139
Alignment:
Q  142 tgtttgaatttcgggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttcaacaaaatctgaatctcattgtaggacc 237  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  6935233 tgtttggattccgggtgaatttgat-agaattgtggcaattttgtccaaatttatatttttgaacttcaacaaaatttgaatcacattgtaggacc 6935139  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 6939083 - 6939013
Alignment:
Q  61 tcaataagactggcctgttataatcaatcaatgtaacacagaaccattctgcaaggcatcactctaattta 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6939083 tcaataagactggcctgttataatcaatcaatgtaacacagaaccattctggaaggcatcactctaattta 6939013  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 50302103 - 50302176
Alignment:
Q  136 tgtgcatgtttgaatttcgggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttca 210  Q
    ||||||||||||  || || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  50302103 tgtgcatgtttgggttccgtgtgaatttgatt-gaattgtggcaattttgtcaaaatttatatttttgaacttca 50302176  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 6525438 - 6525500
Alignment:
Q  155 ggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttcaacaaaatc 218  Q
    |||||||||||| ||||| |||| ||||||||| ||||||||| ||||||||||||||||||||    
T  6525438 ggtgaatttgat-agaatcgtggtaattttgtcaaaatttatacttttgaacttcaacaaaatc 6525500  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 6526944 - 6526980
Alignment:
Q  25 aagtgataaaaaattgaatgacatgccactttgttgt 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  6526944 aagtgataaaaaattgaatgacatgccactttgttgt 6526980  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 6799224 - 6799283
Alignment:
Q  155 ggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttcaacaaa 215  Q
    |||||||||||| |||||||||| ||||||||| |||||| || |||||||||||||||||    
T  6799224 ggtgaatttgat-agaattgtggtaattttgtcaaaatttgtacttttgaacttcaacaaa 6799283  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 6410638 - 6410700
Alignment:
Q  155 ggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttcaacaaaatc 218  Q
    |||||||||||| |||||||||  ||||||||| ||||||||| ||||||| ||||||||||||    
T  6410638 ggtgaatttgat-agaattgtgataattttgtcaaaatttatacttttgaatttcaacaaaatc 6410700  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 6558187 - 6558226
Alignment:
Q  25 aagtgataaaaaattgaatgacatgccactttgttgtcaa 64  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  6558187 aagtgataaaaaattgaatgacatgccaccttgttgtcaa 6558226  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 6789001 - 6789040
Alignment:
Q  22 aagaagtgataaaaaattgaatgacatgccactttgttgt 61  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  6789001 aagaagtcataaaaaattgaatgacatgccactttgttgt 6789040  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 6549838 - 6549879
Alignment:
Q  90 aatgtaacacagaaccattctgcaaggcatcactctaattta 131  Q
    |||||||||||||||||||||||||||||  |||| ||||||    
T  6549838 aatgtaacacagaaccattctgcaaggcactactccaattta 6549879  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 6848532 - 6848561
Alignment:
Q  32 aaaaaattgaatgacatgccactttgttgt 61  Q
    ||||||||||||||||||||||||||||||    
T  6848532 aaaaaattgaatgacatgccactttgttgt 6848561  T

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Target: scaffold0425 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 11651 - 11687
Alignment:
Q  25 aagtgataaaaaattgaatgacatgccactttgttgt 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  11651 aagtgataaaaaattgaatgacatgccactttgttgt 11687  T

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