View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_high_48 (Length: 246)

Name: NF6993_high_48
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_high_48
NF6993_high_48
[»] chr2 (5 HSPs)
chr2 (13-157)||(19103376-19103520)
chr2 (18-157)||(32131270-32131407)
chr2 (31-157)||(22021296-22021421)
chr2 (194-246)||(19103287-19103339)
chr2 (21-110)||(26406590-26406678)
[»] scaffold1024 (2 HSPs)
scaffold1024 (21-157)||(1994-2130)
scaffold1024 (194-244)||(1908-1958)
[»] chr3 (8 HSPs)
chr3 (17-157)||(18385306-18385447)
chr3 (17-157)||(33623995-33624134)
chr3 (56-116)||(36030330-36030390)
chr3 (194-244)||(33624171-33624221)
chr3 (199-246)||(36030458-36030505)
chr3 (194-244)||(18385479-18385529)
chr3 (30-105)||(21630223-21630298)
chr3 (17-61)||(27538910-27538954)
[»] chr1 (8 HSPs)
chr1 (17-157)||(11868394-11868534)
chr1 (18-105)||(47399216-47399303)
chr1 (18-105)||(21345476-21345563)
chr1 (18-105)||(39199258-39199345)
chr1 (18-75)||(46806506-46806563)
chr1 (194-246)||(11868571-11868623)
chr1 (17-96)||(16044792-16044871)
chr1 (17-61)||(32924910-32924954)
[»] chr7 (8 HSPs)
chr7 (15-156)||(34357877-34358018)
chr7 (15-116)||(22980558-22980659)
chr7 (18-110)||(22994212-22994303)
chr7 (18-110)||(20605209-20605300)
chr7 (20-54)||(42829411-42829445)
chr7 (32-84)||(7324326-7324378)
chr7 (18-72)||(26715426-26715479)
chr7 (32-60)||(11070064-11070092)
[»] chr6 (5 HSPs)
chr6 (18-105)||(22459911-22459998)
chr6 (18-157)||(21709297-21709434)
chr6 (18-110)||(13546964-13547055)
chr6 (17-102)||(18739531-18739616)
chr6 (70-110)||(14732545-14732585)
[»] chr5 (2 HSPs)
chr5 (57-156)||(33950828-33950927)
chr5 (18-157)||(22128182-22128318)
[»] scaffold0597 (1 HSPs)
scaffold0597 (21-157)||(6830-6964)
[»] scaffold0454 (1 HSPs)
scaffold0454 (18-110)||(13896-13987)
[»] scaffold0221 (1 HSPs)
scaffold0221 (21-85)||(10959-11023)
[»] chr8 (3 HSPs)
chr8 (36-105)||(44549345-44549414)
chr8 (17-61)||(27916803-27916847)
chr8 (17-61)||(27963222-27963266)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 19103520 - 19103376
Alignment:
Q  13 tggacatcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19103520 tggacatcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaaga 19103421  T
Q  113 aaggnnnnnnntttacaaaagaggggggactaggctaataccctc 157  Q
    ||||       | |||||||||| ||||||||||  |||||||||    
T  19103420 aaggaaaaatttgtacaaaagagaggggactaggtcaataccctc 19103376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 32131270 - 32131407
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaaggn 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| | ||||||| | |||||||| |||||||| |||  |||||     
T  32131270 atcagggagaagctgaaacatcccaactaggttggcacccaacagcagctcccatcctgtaccgcctctc-aatacgtagtaatattaataataaaagg- 32131367  T
Q  118 nnnnnntttacaaaagaggggggactaggctaataccctc 157  Q
          | |||||| ||||||||||||||| |||||||||    
T  32131368 gaaaactgtacaaaggaggggggactaggccaataccctc 32131407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 22021296 - 22021421
Alignment:
Q  31 tgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaaggnnnnnnntttacaa 130  Q
    |||| ||||||||||||||||||| ||||||| | |||||||||| | |||||| ||| |||| |||||||||||||||||||| |       | |||||    
T  22021296 tgaagcatcccaactaggttggcacccaacaataactcccatcctctaccgccttcctgatacataataatattattaaagaaaag-aaaatatgtacaa 22021394  T
Q  131 aagaggggggactaggctaataccctc 157  Q
    | ||||||||||||||| |||||||||    
T  22021395 aggaggggggactaggccaataccctc 22021421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 19103339 - 19103287
Alignment:
Q  194 aagactagaaatggctacgaggatctataactaggaagcccatttctgtcttt 246  Q
    ||||||||||||||||||||| |||||||| |||||||| |||||||||||||    
T  19103339 aagactagaaatggctacgagaatctataattaggaagctcatttctgtcttt 19103287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 26406678 - 26406590
Alignment:
Q  21 agggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaa 110  Q
    ||||||| | |||| ||||||||||| ||||||| ||  ||||| |||| ||||||| | || | |||||||||||||||||||| ||||    
T  26406678 agggagaggttgaagcatcccaactaagttggcacccc-caacaactcctatcctttactgcattcctaatacgtaataatattaataaa 26406590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 2130 - 1994
Alignment:
Q  21 agggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaaggnnnn 120  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        
T  2130 agggagaagctgaaacatcccaactaggttggcacgcaacaacacctcccatcctttgtcgcctccctaatacgtaataatattattaaagaaaggaaaa 2031  T
Q  121 nnntttacaaaagaggggggactaggctaataccctc 157  Q
       | |||||||||||||||||||||| |||||||||    
T  2030 atctgtacaaaagaggggggactaggccaataccctc 1994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 1958 - 1908
Alignment:
Q  194 aagactagaaatggctacgaggatctataactaggaagcccatttctgtct 244  Q
    ||||||||||||||||| ||| ||||| || ||||||||||||||||||||    
T  1958 aagactagaaatggctaagagaatctaaaattaggaagcccatttctgtct 1908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 18385306 - 18385447
Alignment:
Q  17 catcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaag-aaag 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  18385306 catcagggagaagctgaaacatcccaactaggttggcacccaacaacacctcccatcctttgtcgccttcctaatacgtaataatattattaaagaaaag 18385405  T
Q  116 gnnnnnnntttacaaaagaggggggactaggctaataccctc 157  Q
            | |||||||||||||||||||||| |||||||||    
T  18385406 aaaaaatatgtacaaaagaggggggactaggccaataccctc 18385447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 33623995 - 33624134
Alignment:
Q  17 catcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaagg 116  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||    
T  33623995 catcagggagaagctgaaacatctcaattaggttggcacccaacaacacctcccatcctttgtcgtctccctaatacgtaataataatattaaagaaagg 33624094  T
Q  117 nnnnnnntttacaaaagaggggggactaggctaataccctc 157  Q
           | ||||||||||| |||||||||| |||||||||    
T  33624095 -aaaatatgtacaaaagaggagggactaggccaataccctc 33624134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 36030330 - 36030390
Alignment:
Q  56 ccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaagg 116  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  36030330 ccaacagcacctctcatccttagccgcctccctaatacgtaataatactattaaagaaagg 36030390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 33624171 - 33624221
Alignment:
Q  194 aagactagaaatggctacgaggatctataactaggaagcccatttctgtct 244  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  33624171 aagactagaaatggctacgagaatctaaaattaggaagcccatttctgtct 33624221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 36030458 - 36030505
Alignment:
Q  199 tagaaatggctacgaggatctataactaggaagcccatttctgtcttt 246  Q
    |||||||||||||||| |||||||| ||||||||||||||||| ||||    
T  36030458 tagaaatggctacgagaatctataattaggaagcccatttctgccttt 36030505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 18385479 - 18385529
Alignment:
Q  194 aagactagaaatggctacgaggatctataactaggaagcccatttctgtct 244  Q
    ||||||||||||||||||||| ||||| || ||||||||| ||||||||||    
T  18385479 aagactagaaatggctacgagaatctaaaattaggaagcctatttctgtct 18385529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 21630298 - 21630223
Alignment:
Q  30 ctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatatta 105  Q
    ||||| ||||||||||||||||||||||||||  | | |||||||| | ||||||  | ||||||||||| |||||    
T  21630298 ctgaagcatcccaactaggttggcatccaacataaacccccatcctctaccgcctttccaatacgtaatattatta 21630223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 27538910 - 27538954
Alignment:
Q  17 catcagggagaagctgaaacatcccaactaggttggcatccaaca 61  Q
    |||| ||||||| ||||| ||||| ||||||||||||||||||||    
T  27538910 catccgggagaatctgaagcatccaaactaggttggcatccaaca 27538954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 11868394 - 11868534
Alignment:
Q  17 catcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaagg 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  11868394 catcagggagaagcttaaacatcccaactaggttggcatccaacagcaactctcatcctttgtcgccttcctaatacgtaataatattattaaagtaagg 11868493  T
Q  117 nnnnnnntttacaaaagaggggggactaggctaataccctc 157  Q
           | |||||||||||||||||||||| |||||||||    
T  11868494 aaatatttgtacaaaagaggggggactaggccaataccctc 11868534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 47399216 - 47399303
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatatta 105  Q
    ||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||  |||||| ||||||||||||| |||||    
T  47399216 atcagggagaagctgaaacatcccaactaggttggcacccaacagcaactcccatcctttagcgcctctctaatacgtaatattatta 47399303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 21345476 - 21345563
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatatta 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  | |||||||||||| || |||| ||||||||||||| |||||    
T  21345476 atcagggagaagctgaaacatcccaactaggttggcacccaacagtaactcccatcctttaccacctctctaatacgtaatattatta 21345563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 39199345 - 39199258
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatatta 105  Q
    |||| |||||||||||||||||||||||||||||||| |||||| || ||||||||||||  |||||| ||||||||||||| |||||    
T  39199345 atcacggagaagctgaaacatcccaactaggttggcacccaacagcaactcccatcctttatcgcctctctaatacgtaatattatta 39199258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 46806563 - 46806506
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcct 75  Q
    |||| ||||||||||||||||||||||||| |||||| |||||| || ||||||||||    
T  46806563 atcaaggagaagctgaaacatcccaactagattggcacccaacagcagctcccatcct 46806506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 11868571 - 11868623
Alignment:
Q  194 aagactagaaatggctacgaggatctataactaggaagcccatttctgtcttt 246  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||| |||||||    
T  11868571 aagactataaatggctacgagaatctataattaggaagcccatttatgtcttt 11868623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 16044871 - 16044792
Alignment:
Q  17 catcagggagaagctgaaacatcccaactaggttggcatccaaca-acacctcccatcctttgccgcctccctaatacgta 96  Q
    |||| ||||||  |||||| |||||||||||||||||| |||||| |||||| ||||||| | ||||||  ||||||||||    
T  16044871 catccgggagagtctgaaagatcccaactaggttggcacccaacagacacct-ccatcctctaccgcctttctaatacgta 16044792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 32924910 - 32924954
Alignment:
Q  17 catcagggagaagctgaaacatcccaactaggttggcatccaaca 61  Q
    |||| ||||||| ||||| ||||||||||||||||||| ||||||    
T  32924910 catccgggagaatctgaagcatcccaactaggttggcacccaaca 32924954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 34357877 - 34358018
Alignment:
Q  15 gacatcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaa 114  Q
    |||||||||||||||||||||||| |||||||||||| || ||||||  | |||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  34357877 gacatcagggagaagctgaaacattccaactaggttgacacccaacattatctcccatcctctgccgactcactaatacgtaataatattattaaagaaa 34357976  T
Q  115 ggnnnnnnntttacaaaagaggggggactaggctaataccct 156  Q
    ||       | |||||||||||||||||||||| ||||||||    
T  34357977 ggaaaaatctgtacaaaagaggggggactaggccaataccct 34358018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 22980558 - 22980659
Alignment:
Q  15 gacatcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaa 114  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||| || |||  ||||| ||||||| ||||||||||||||||||||||||||||||    
T  22980558 gacatcagggagaaactgaaacatcccaactaggttggcacccaacatcaactcttatcctctgccgccaccctaatacgtaataatattattaaagaaa 22980657  T
Q  115 gg 116  Q
    ||    
T  22980658 gg 22980659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 22994212 - 22994303
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaa 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||| | |||||||| |||||||| ||||    
T  22994212 atcagggagaagctgaaacatcccaactaggttggcacccaacaacagctcccatcctgtaccgcctctc-aatacgtagtaatattaataaa 22994303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 20605300 - 20605209
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaa 110  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || |||||||||| | ||||||| | |||||| | |||||||| ||||    
T  20605300 atcagggagaagctgaaacatcccaactaggttggcacacaacagcagctcccatcctgtaccgcctctc-aatacgcagtaatattaataaa 20605209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 42829445 - 42829411
Alignment:
Q  20 cagggagaagctgaaacatcccaactaggttggca 54  Q
    |||||||||||||||||||||||||||||||||||    
T  42829445 cagggagaagctgaaacatcccaactaggttggca 42829411  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 7324378 - 7324326
Alignment:
Q  32 gaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcct 84  Q
    ||||||||||||||||||||||||||||| | | |||||||||| | ||||||    
T  7324378 gaaacatcccaactaggttggcatccaactagagctcccatcctctaccgcct 7324326  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 26715479 - 26715426
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccat 72  Q
    |||||||||||||||||||||  |||||||||||||| |||||| || |||||||    
T  26715479 atcagggagaagctgaaacat-tcaactaggttggcacccaacagcagctcccat 26715426  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 11070092 - 11070064
Alignment:
Q  32 gaaacatcccaactaggttggcatccaac 60  Q
    |||||||||||||||||||||||||||||    
T  11070092 gaaacatcccaactaggttggcatccaac 11070064  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 22459998 - 22459911
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatatta 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||| ||||||||||||| |||||    
T  22459998 atcagggagaagctgaaacatcccaactaggttggcacccaacaacaactcccattctttaccgcctctctaatacgtaatattatta 22459911  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 21709297 - 21709434
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaaggn 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||   ||||||| | | |||||| |||||||| |||| |||||     
T  21709297 atcagggagaagctgaaacatcccaactaggttggcacccaacagcagctcccatcctgaaccgcctctc-attacgtagtaatattaataaa-aaaggg 21709394  T
Q  118 nnnnnntttacaaaagaggggggactaggctaataccctc 157  Q
          | |||||| ||||||||||||||| |||||||||    
T  21709395 gaaaactgtacaaaggaggggggactaggccaataccctc 21709434  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 13547055 - 13546964
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaa 110  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||||| || |||| ||||  |||||| |||||||||| |||||||||||||    
T  13547055 atcatggagaagctgaaacatcccaactaggtt-gcacccaacaacaacttccattctttaacgcctctctaatacgtagtaatattattaaa 13546964  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 18739531 - 18739616
Alignment:
Q  17 catcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataata 102  Q
    ||||||| ||| | |||| ||| |||||||| |||||| ||||||||| ||| |||||| | |||||| |||||||||||||||||    
T  18739531 catcaggaagaggttgaagcattccaactagattggcacccaacaacaactctcatcctctaccgccttcctaatacgtaataata 18739616  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 14732545 - 14732585
Alignment:
Q  70 catcctttgccgcctccctaatacgtaataatattattaaa 110  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  14732545 catcctctgccgcctctcgaatacgtaataatattattaaa 14732585  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 33950828 - 33950927
Alignment:
Q  57 caacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaaggnnnnnnntttacaaaagaggggggactaggctaataccct 156  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       | ||||||||| ||||||| |||| ||||||||    
T  33950828 caacaacacctcccatcctttgccgcctccctaatacataataatattattaaagaaaggaaaaatctgtacaaaagaagggggaccaggccaataccct 33950927  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 22128318 - 22128182
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaaggn 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||| || |||| |||||||    ||||||||||||| || ||     
T  22128318 atcagggagaagctgaaacatcccaactaggttggcacccaacagcaactcccatcatttaccacctctctaatac---ttaatattattaaaaaagggg 22128222  T
Q  118 nnnnnntttacaaaagaggggggactaggctaataccctc 157  Q
          | |||||| ||||||||||||||| |||||||||    
T  22128221 gaaaactgtacaaaggaggggggactaggccaataccctc 22128182  T

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Target: scaffold0597 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 6830 - 6964
Alignment:
Q  21 agggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaagaaaggnnnn 120  Q
    ||||||||||||||||||||||||||||||||||  ||||| || |||||||||||| || |||| ||||||||||||| |||||  ||| |||||        
T  6830 agggagaagctgaaacatcccaactaggttggcacgcaacagcaactcccatcctttaccacctctctaatacgtaatattatta--aaaaaaagggaaa 6927  T
Q  121 nnntttacaaaagaggggggactaggctaataccctc 157  Q
       | |||||| ||||||||||||||| |||||||||    
T  6928 aattgtacaaaggaggggggactaggccaataccctc 6964  T

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Target: scaffold0454 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 13896 - 13987
Alignment:
Q  18 atcagggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatattattaaa 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| | ||||||| | |||||||| |||||||| ||||    
T  13896 atcagggagaagctgaaacatcccaactaggttggcacccaacagcagctcccatcctgtaccgcctctc-aatacgtagtaatattaataaa 13987  T

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Target: scaffold0221 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 10959 - 11023
Alignment:
Q  21 agggagaagctgaaacatcccaactaggttggcatccaacaacacctcccatcctttgccgcctc 85  Q
    |||||||| ||||||||||||||||||||||||| |||||| || ||| |||| ||| |||||||    
T  10959 agggagaaactgaaacatcccaactaggttggcacccaacagcaactctcatcatttaccgcctc 11023  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 44549345 - 44549414
Alignment:
Q  36 catcccaactaggttggcatccaacaacacctcccatcctttgccgcctccctaatacgtaataatatta 105  Q
    ||||||||||||||||||| ||||||  | |||||||||| | |||||| || ||||| ||||| |||||    
T  44549345 catcccaactaggttggcacccaacagaaactcccatcctctaccgccttcccaatacataatattatta 44549414  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 27916847 - 27916803
Alignment:
Q  17 catcagggagaagctgaaacatcccaactaggttggcatccaaca 61  Q
    |||| ||||||| ||||| ||||||||||||||||||| ||||||    
T  27916847 catccgggagaaactgaagcatcccaactaggttggcacccaaca 27916803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 27963266 - 27963222
Alignment:
Q  17 catcagggagaagctgaaacatcccaactaggttggcatccaaca 61  Q
    |||| ||||||| ||||| ||||||||||||||||||| ||||||    
T  27963266 catccgggagaaactgaagcatcccaactaggttggcacccaaca 27963222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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