View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_high_52 (Length: 224)
Name: NF6993_high_52
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_high_52 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 21705607 - 21705830
Alignment:
| Q |
1 |
tccacgggaatgtaacttgcagaatctcaagatcctcagcttagtctcatgcaagtctggtgaagtactcttcccgacatctgttgctcaaagtctgcaa |
100 |
Q |
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| T |
21705607 |
tccacgggaatgtaacttgcagaatctcaagatcctcatcttattctcatgcaagtctggtgaagtactcttcccgacatctgttgctcaaagtctgcaa |
21705706 |
T |
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| Q |
101 |
aaattagaagatctggaaataggtggatgtcatgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaacacaagagaggatatag |
200 |
Q |
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| T |
21705707 |
aaattagaagagctgcgcatacgtgaatgtcgtgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaacacaagagaggatatag |
21705806 |
T |
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| Q |
201 |
ttccagatcaaatgaattctcatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
21705807 |
ttccagatcaaatgaattctcatt |
21705830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 21713900 - 21713718
Alignment:
| Q |
1 |
tccacgggaatgtaacttgcagaatctcaagatcctcagcttagtctcatgcaagtctggtgaagtactcttcccgacatctgttgctcaaagtctgcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
21713900 |
tccacgggaatgtaacttgcagaatctcaagatcctcagtttagagtattgcaagtctggtgaagtactctttccgaaatctgttgctcaaagtctgcaa |
21713801 |
T |
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| Q |
101 |
aaattagaagatctggaaataggtggatgtcatgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaa |
183 |
Q |
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| T |
21713800 |
caattagaacaactgaaaatacgtaattgccatgaattgaagcttataattgctgcaggtggaagagagcatggttgttgtaa |
21713718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 21117084 - 21117247
Alignment:
| Q |
61 |
tgaagtactcttcccgacatctgttgctcaaagtctgcaaaaattagaagatctggaaataggtggatgtcatgaattgaagcttataattgcggccagt |
160 |
Q |
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||||||||||||| | ||||||||||||||||| |||| || ||||| | || |||| |||| || || ||||||||| ||||||||| || ||| |
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| T |
21117084 |
tgaagtactcttctcagcatctgttgctcaaagtttgcagcaactagaacaactaaaaatcagtgggtgctataaattgaagcatataattgctgctagt |
21117183 |
T |
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| Q |
161 |
ggaagagagcatgatggttgtaacacaagagaggatatagttccagatcaaatgaattctcatt |
224 |
Q |
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| T |
21117184 |
ggaaggcaacatggtggtagtaatacaagtgaggaaataagtccagctccaatgaattctcatt |
21117247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 21124582 - 21124674
Alignment:
| Q |
132 |
atgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaacacaagagaggatatagttccagatcaaatgaattctcatt |
224 |
Q |
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|||||||||||| ||||||||| || |||||||| | |||| |||| |||| ||||| ||||| ||| ||||| || |||||||||||||| |
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| T |
21124582 |
atgaattgaagcatataattgctgctagtggaagccaacatggtggtagtaatacaagtgaggaaataagtccagctccaatgaattctcatt |
21124674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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