View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_high_7 (Length: 567)
Name: NF6993_high_7
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Original strand, 52238597 - 52239133
Alignment:
| Q |
18 |
tttatgaccaatttcaagcaagattctagaaattgcctatgaaagagacaaactttttgtaatgctaataaattgacccaaacatagtacctgtaaaata |
117 |
Q |
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| T |
52238597 |
tttatgaccaatttcaagcaagattctagaaattgcctatgaaagagaca--ctttttgtaatgctaataaattgacccaaacatagtacctgcaaaata |
52238694 |
T |
|
| Q |
118 |
tcaaaaactttttctgcagtgtacttttggtctgaagtagcacccttttgctgcaacttatctggatgcagactgagtaaagctctttgataagatcttt |
217 |
Q |
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| T |
52238695 |
tcaaaaactttttctgcagtgtacttttggtctgaagtagcacccttttgctgcaacttatccggatgcagactgagtaaagctctttgataagatcttt |
52238794 |
T |
|
| Q |
218 |
taaccgcattcccttcaattatatcaacaagaggcacaggcttccagccacagtttggccaaagtacctttattcatgatggaagccattttagaacaat |
317 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52238795 |
taaccgcgttcccttcaattatatcaacaagaggcacaggcttccagccacagtttggccaaagtacctttattcatgatggaagccattttagaacaat |
52238894 |
T |
|
| Q |
318 |
tttgtacttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacatgctttattgttgttaacaggaaataaaatat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52238895 |
tttgtacttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacatgctttattgttgttaacaggaaataaaatat |
52238994 |
T |
|
| Q |
418 |
ggaattttcaatcaaatgggttaagaatagtaagtactagacgannnnnnnnnnnnnnnnntattcttacgtattgtaatgttgacaacagtgagcgtat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52238995 |
ggaattttcaatcaaatgggttaagaatagtaagtactagacgaacacacagacacacacatattcttacgtattgtaatgttgacaacagtgagcgtat |
52239094 |
T |
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| Q |
518 |
atttccttcctttcctttagaccattgttgtatcttctt |
556 |
Q |
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| T |
52239095 |
atttccttcctttcctttagaccattgttgtatcttctt |
52239133 |
T |
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