View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_low_10 (Length: 542)

Name: NF6993_low_10
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_low_10
NF6993_low_10
[»] chr5 (1 HSPs)
chr5 (16-530)||(943895-944409)
[»] chr1 (1 HSPs)
chr1 (58-300)||(46661322-46661564)


Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 16 - 530
Target Start/End: Original strand, 943895 - 944409
Alignment:
Q  16 tcaattttagcatcagagagggacttctccaacacagtattattctccaatatcttctgcatactttcagtgataatttgcagctgtgaaagaagagttg 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  943895 tcaattttagcatcagagagggacttctccagcacagtattattctccaatatcttctgcatactttcagtgataatttgcagctgtgaaagaagggttg 943994  T
Q  116 atttctcatcagcaagaatggatttttcttcttggagaacatggcagaactgttgaatttccttcactgttcctctcaatccatctaactcatcattcag 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  943995 atttctcatcagcaagaatggatttttcttcttggagaacttggcagaactgttgaatttccttcactgttcctctcaatccatctaactcatcattcag 944094  T
Q  216 tcctaacagagaaaattccatacaggcattttccatcaaaacttcattcatgtcttttgatttttcacgaagagcttctttctcactgtgttcttttttg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  944095 tcctaacagagaaaattccatacaggcattttccatcaaaacttcattcatgtctttcgatttttcacgaagagcttctttctcactgtgttcttttttg 944194  T
Q  316 caggtttcttttagcatgaagttctcattttgtagatcttttacagatgctgcaaaagaattaggattcagacctaaactctgtagttgttcaagcatag 415  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  944195 caggtttcttttagcatgaagttctcattttgtagatctcttacagatgctgcaaaagaattaggattcagacctaaactctgtagttgttcaagcatag 944294  T
Q  416 cctgatatctctcattcaagtgctgtatatcatcttttatctgatgagtttcacgctggaggacattgctttcttcagtgcttgtgtgaaactctcgttc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  944295 cctgatatctctcattcaagtgctgtatatcatcttttatctgatgagtttcacgctggaggacattgctttcttcagtgcttgtgtgaaactctcgttc 944394  T
Q  516 aagtttctctttgat 530  Q
    |||||||||||||||    
T  944395 aagtttctctttgat 944409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 58 - 300
Target Start/End: Original strand, 46661322 - 46661564
Alignment:
Q  58 ttctccaatatcttctgcatactttcagtgataatttgcagctgtgaaagaagagttgatttctcatcagcaagaatggatttttcttcttggagaacat 157  Q
    |||||||||| ||||||||||||||| |||||||||||||  || || |  | || |||||||||| || ||||| ||||||||||||| |  |||||||    
T  46661322 ttctccaataacttctgcatactttcggtgataatttgcaattgcgacaataaagctgatttctcaccaacaagagtggatttttcttccttcagaacat 46661421  T
Q  158 ggcagaactgttgaatttccttcactgttcctctcaatccatctaactcatcattcagtcctaacagagaaaattccatacaggcattttccatcaaaac 257  Q
    ||||  ||| ||||| || ||||| |||  |||| | |||||||| |||||||||||  | | | || ||| ||| |||| |||| |||||  ||||||     
T  46661422 ggcatgactcttgaaatttcttcattgtatctcttactccatctagctcatcattcaaacttgatagggaacattgcataaaggccttttcactcaaaag 46661521  T
Q  258 ttcattcatgtcttttgatttttcacgaagagcttctttctca 300  Q
    || || ||| || || || ||||||||||||||||||||||||    
T  46661522 tttatccatatccttcgacttttcacgaagagcttctttctca 46661564  T

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