View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_11 (Length: 514)
Name: NF6993_low_11
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_11 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14925272 - 14925037
Alignment:
| Q |
1 |
atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatctggcgacgcttgcatgcttcaacaattccaggatgaatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14925272 |
atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatttggcgacgcttgcatgcttcaacaattccaggatgaatata |
14925173 |
T |
|
| Q |
101 |
agaggaacagagtgatggcacatgctagaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcatctgattc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14925172 |
agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc |
14925073 |
T |
|
| Q |
201 |
acctctattgtctcgtttgcagtattataaagtgac |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
14925072 |
acctctattgtctcgtttgcagtattataaagtgac |
14925037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11469202 - 11469253
Alignment:
| Q |
1 |
atattggcccaccacttgcagctgccccaactctcttttctttctctccttc |
52 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11469202 |
atattggcccaccacttgcagctgtcccaactctcttttctttctctccttc |
11469253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12789 - 12554
Alignment:
| Q |
1 |
atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatctggcgacgcttgcatgcttcaacaattccaggatgaatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12789 |
atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatctggtgacgcttgcatgcttcaacaattccaggatgaatata |
12690 |
T |
|
| Q |
101 |
agaggaacagagtgatggcacatgctagaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcatctgattc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12689 |
agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc |
12590 |
T |
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| Q |
201 |
acctctattgtctcgtttgcagtattataaagtgac |
236 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
12589 |
acctctattgtctcgcttgcagtattataaagtgac |
12554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 10421035 - 10421269
Alignment:
| Q |
1 |
atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatctggcgacgcttgcatgcttcaacaattccaggatgaatata |
100 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10421035 |
atattgacccaccacttgcagctgccccaactctcttttctttctctccttcccgaatttggtgacgcttgcatgcttcaacaattccaggatgaatata |
10421134 |
T |
|
| Q |
101 |
agaggaacagagtgatggcacatgctagaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcatctgattc |
200 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
10421135 |
agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacatcatca-ctgattc |
10421233 |
T |
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| Q |
201 |
acctctattgtctcgtttgcagtattataaagtgac |
236 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |
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| T |
10421234 |
acctctattgtctcgtttgcagtattataaagtgac |
10421269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6246905 - 6246956
Alignment:
| Q |
1 |
atattggcccaccacttgcagctgccccaactctcttttctttctctccttc |
52 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6246905 |
atattggcccaccacttgcagctgtcccaactctcttttctttctctccttc |
6246956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 265 - 500
Target Start/End: Complemental strand, 10248927 - 10248691
Alignment:
| Q |
265 |
cttaaactagatatgtatactttctctgatccatccattcnnnnnnnnnnnnnnnnnccatttcagatcttattcattatactttagcagttgggattag |
364 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10248927 |
cttaaactagatatgtatactttgtctgatccatccattcttttattttatttttttccatttcagatcttattcattatactttagcagttgggattag |
10248828 |
T |
|
| Q |
365 |
ttacatttttgttaattgttaat-aaattagtaactttttctttaaaaagtgtaaaccaatatttgaggtggtcatgttccactttttccaaaggggtga |
463 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10248827 |
ttacatttttgttaattgttaatcaaattagtaacttttcctttaaaaagtgtaaaccaatatttgaggtggtcatgttccactttttccaaaggggtga |
10248728 |
T |
|
| Q |
464 |
tgttgtatcagtttttaaattaattttcgtttgatgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
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| T |
10248727 |
tgttgtatcagtttttaaattaattttcgtttcatgt |
10248691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 45501022 - 45500893
Alignment:
| Q |
105 |
gaacagagtgatggcacatgctagaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcatctgattcacct |
204 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45501022 |
gaacagagtgatggcacatgctggaacttgatttttgagaatttgatcccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacct |
45500923 |
T |
|
| Q |
205 |
ctattgtctcgtttgcagtattataaagtg |
234 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
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| T |
45500922 |
ctattatctcgtttgcagtattataaagtg |
45500893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12350578 - 12350527
Alignment:
| Q |
1 |
atattggcccaccacttgcagctgccccaactctcttttctttctctccttc |
52 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
12350578 |
atattggcccaccacttgtagctgtcccaactctcttttctttctctccttc |
12350527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4555319 - 4555265
Alignment:
| Q |
1 |
atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccg |
55 |
Q |
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||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| |
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|
| T |
4555319 |
atattggcccaccgcttgcagctgtcccaactctcttttatttctttccttcccg |
4555265 |
T |
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