View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_13 (Length: 462)
Name: NF6993_low_13
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 283 - 447
Target Start/End: Original strand, 21226857 - 21227021
Alignment:
| Q |
283 |
atgcgctctacttgagttatcattaatgtacatgttttgtttgtaaattaaatatgccaaaggaaggaagtcgagtgaacattaatgagttagtttataa |
382 |
Q |
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| T |
21226857 |
atgcgctctactcgatttatcattaatgtacatattttgtttataaattaaatatgccaaaggaaggaagtcgagtgaacattaatgagttagtttataa |
21226956 |
T |
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| Q |
383 |
cattttggtttcataatttttgacaagaattaatatcaaagttcaggtctcaacttatagttgat |
447 |
Q |
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| T |
21226957 |
cattttggtttcataatttttgacaagaattagtatcaaagttcaggtctcaactcatagttgat |
21227021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 21232514 - 21232620
Alignment:
| Q |
1 |
tgaggctgaggctgaggctgaggccgaggttagtgaggtatgtccactatgatatgcgtattagagatagaagagaaagatgctaaggaaactacatcaa |
100 |
Q |
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| T |
21232514 |
tgaggctgaggctgaggccgaggccgaggttagtgaggtatgtacactatgatatgcgtattagagatagaaaagaaagatgctaaggaaactacatcaa |
21232613 |
T |
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| Q |
101 |
taaactt |
107 |
Q |
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| T |
21232614 |
taaactt |
21232620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 21226807 - 21226861
Alignment:
| Q |
4 |
ggctgaggctgaggctgaggccgaggttagtgaggtatgtccactatgatatgcg |
58 |
Q |
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| T |
21226807 |
ggctgaggctgaggccgaggccgaggttagtgatgtatgtccactatgatatgcg |
21226861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 10034506 - 10034599
Alignment:
| Q |
287 |
gctctacttgagttatcattaatgtacatgttttgtttgtaaattaaata-tgccaaa-ggaaggaagtcgagtgaacattaatgagttagttt |
378 |
Q |
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| T |
10034506 |
gctctactcgatttatcattaatgttcatgttttgctcctaaattaagtaatgccaaaaggaaggaagccgattgaacattaatgatttagttt |
10034599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 61 - 282
Target Start/End: Original strand, 15939390 - 15939610
Alignment:
| Q |
61 |
ttagagatagaagagaaagatgctaaggaaactacatcaataaacttgtcattacctagtttacttgagatgcaagctacctagttacacttactctaat |
160 |
Q |
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| T |
15939390 |
ttagagatagaagagaaagatgctaaggaatccacttcaacaagctcttcattacctagtttacttgagatacaagctagctagttacacttactatact |
15939489 |
T |
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| Q |
161 |
cttccatattagaatgtaattaggctaattgtaatacaacaagttatctatagatacttgatataactcacatttccatctatgagaatgagaccataat |
260 |
Q |
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| T |
15939490 |
ctcccatattagtgtgtaattaggctaattgtaata-tactagttgtctataaatacttgatctaactcacatttccatctatgagaatgagactattat |
15939588 |
T |
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| Q |
261 |
tcatttcttactttccataaca |
282 |
Q |
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| T |
15939589 |
tcatttcttactttccataaca |
15939610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 282
Target Start/End: Complemental strand, 32705023 - 32704856
Alignment:
| Q |
116 |
ctagtttacttgagatgcaagctacctagttacacttactctaatcttccatattagaatgtaattaggctaattgtaatacaaca-agttatctataga |
214 |
Q |
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| T |
32705023 |
ctagcttacttgagatacaagctacttagttacatttagtctgaactctcatattagcatttaattaggttaagtgtaatttgctatatttgtctataaa |
32704924 |
T |
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| Q |
215 |
tacttgatataactcacatttccatctatgagaatgagaccataattcatttcttactttccataaca |
282 |
Q |
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| T |
32704923 |
tatttgatgtatctcacatttccatctatgagaatgagactattattcattttttattttccataaca |
32704856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 282
Target Start/End: Original strand, 12054620 - 12054782
Alignment:
| Q |
121 |
ttacttgagatgcaagctacctagttacacttactctaatcttccatattagaatgtaattaggctaattgtaatacaac--aagttatctatagatact |
218 |
Q |
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| T |
12054620 |
ttacttgagatacaagctacttagttacatttagtctaatcttcaatattagcatgtaattaatttaagtgtaata-agctgaactactctatatatact |
12054718 |
T |
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| Q |
219 |
tgatataactcacatttccatctatgagaatgagaccataattcatttcttactttccataaca |
282 |
Q |
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| T |
12054719 |
tgatgtaacactcttttccagttataagaatgagatcattttccatttcttactttccataaca |
12054782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 20629339 - 20629279
Alignment:
| Q |
121 |
ttacttgagatgcaagctacctagttacacttactctaatcttccatattagaatgtaatt |
181 |
Q |
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| T |
20629339 |
ttacttgagatacaagctacttagttacatttagtctaatcttcaatattagcatgtaatt |
20629279 |
T |
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