View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_14 (Length: 439)
Name: NF6993_low_14
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 29104719 - 29104329
Alignment:
| Q |
18 |
aattattgctgagtgcatggtaaaaaacggttatggaaaagaatgtataagagtttacaccacggtgagaaaatccatcgtcgatgaaggtatttataaa |
117 |
Q |
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| T |
29104719 |
aattattgctgagtgcatggtaaaaaacggttatggaaaagaatgtataagagtttacaccacggtgagaaaatccatcgtcgatgaaggtatttataaa |
29104620 |
T |
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| Q |
118 |
ctcgacgtggaggaacgaagtttctcgaagatgaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcag |
217 |
Q |
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| T |
29104619 |
ctcaacgtggaggaacgaagtttctcgaagatgaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaggcggttaagatctcag |
29104520 |
T |
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| Q |
218 |
tgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttc |
317 |
Q |
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| T |
29104519 |
tgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattcca------------tcaaagaagcttgttttgctgagatttc |
29104432 |
T |
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| Q |
318 |
taagaatggagctattttgcttttcagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgct |
417 |
Q |
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| T |
29104431 |
taaggatggagctattttacttttaagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgcttgcttgatatgtacgct |
29104332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 29090459 - 29090075
Alignment:
| Q |
17 |
aaattattgctgagtgcatggtaaaaaacggttatggaaaagaatgtataagagtttacaccacggtgagaaaatccatcgtcgatgaaggtatttataa |
116 |
Q |
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|||||||||| ||||||||||| |||||||| |||||||| ||| ||| |||||||||||||| |||||||| || || ||||||||| |||| || |
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| T |
29090459 |
aaattattgccgagtgcatggtttctaacggttacggaaaagagtgtgtaaacgtttacaccacggttagaaaatcgattgttgatgaaggtgtttacaa |
29090360 |
T |
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| Q |
117 |
actcgacgtggaggaacgaagtttctcgaagatgaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctca |
216 |
Q |
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|||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
29090359 |
actcaatgtggaggaacgaagtttctcgaaggggaataagatggactgggaagttcttgagatgaaaatcaactgttggttagaggcagttaagatctca |
29090260 |
T |
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| Q |
217 |
gtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagattt |
316 |
Q |
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| T |
29090259 |
gtgagaacactcttttctggagagagaaacctctgcgaacgaattttcgcttcgaattcc------------atcagagaagcttgttttggtgaaattt |
29090172 |
T |
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| Q |
317 |
ctaaga-atggagctattttgcttttcagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgta |
413 |
Q |
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| T |
29090171 |
c-aagagatggagctactcttctcttacgatttcctgaattcgttgcgaaaacaaagaaatggacaccggagaagattttccgtttgcttgatatgta |
29090075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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