View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_15 (Length: 421)
Name: NF6993_low_15
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 27680826 - 27681214
Alignment:
| Q |
18 |
aaaagcttttgccattctatctctatctattcaagggatgagggacaaaggttttggttttttcatgttgtcaactagttgaacaattaatcagaataga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27680826 |
aaaagcttttgccattctatctctatctattcaagggatgagggacaaaggttttggttttttcatgttgtcaacaagttgaacaattaatcagaataga |
27680925 |
T |
|
| Q |
118 |
tggtgattgtctggttgagttgatcatgtcatgtaggaacaaagttcaagtctacggatctgttagaatgcctcagctgcatacattattaataagttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
27680926 |
tggtgattgtctggttgagttgatcatgtcatgtaggagcaaagttcaagtctacggatctgttaggatgcctcagctgcatacattactaataagttta |
27681025 |
T |
|
| Q |
218 |
tatgttctaactcaacttataaaaatatcaaaattgctaagttgaacgtcgtgattaaagtttaaacctgacttctccacttatgtctgtgatttttaat |
317 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27681026 |
taagttctatctcaacttataaaaatatcaaaattgctaagttgaacgtcgtgattgaagtttaaacctgacttctccacttatgtgtgtgatttttaat |
27681125 |
T |
|
| Q |
318 |
ggccattgtcatatttcatttgcctatnnnnnnnngtcttgagtgcaaattggaatgaactcaaaactagaggattagatgtgtatgtt |
406 |
Q |
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|||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27681126 |
agccattgtcatatttcatttacctataaaaaaaagtcttgagtacaaattggaatgaactcaaaactagaggattagatgtatatgtt |
27681214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 21891281 - 21891107
Alignment:
| Q |
27 |
tgccattctatctctatctattcaagggatgagggacaaaggttttggttttttcatgttgtcaactagttgaacaattaatcagaatagatggtgattg |
126 |
Q |
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|||| ||| ||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||| |||| |
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| T |
21891281 |
tgcccttccatctctaactattcaagggatgggggacaaaggttttggtttttttatgttgtcaaagagttgaacaatcaa----aatagatggcaattg |
21891186 |
T |
|
| Q |
127 |
tctggttgagttgatcatgtcatgtaggaacaaagttcaagtctacggatctgttagaatgcctcagctgcatacatta |
205 |
Q |
| |
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||| | || ||||||| |||||||| |||||| |||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
21891185 |
cctgatcgaattgatcaggtcatgtaagaacaaggttcaagtctaccgatctgttaggatgcctcagctgcatacatta |
21891107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 34660711 - 34660537
Alignment:
| Q |
27 |
tgccattctatctctatctattcaagggatgagggacaaaggttttggttttttcatgttgtcaactagttgaacaattaatcagaatagatggtgattg |
126 |
Q |
| |
|
|||| ||| ||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||| |
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| T |
34660711 |
tgcctttccatccctagctattcaagggatgggggacagaggttttggttttttcatgttgtcaaagagttgaacaatcaa----aatagatggcgattg |
34660616 |
T |
|
| Q |
127 |
tctggttgagttgatcatgtcatgtaggaacaaagttcaagtctacggatctgttagaatgcctcagctgcatacatta |
205 |
Q |
| |
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||| | || ||||||| |||||||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
34660615 |
cctgatcgaattgatcaggtcatgtaagaacaaggttcaagtctacccatctgttaggatgcctcagctgcatacatta |
34660537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 2234666 - 2234571
Alignment:
| Q |
44 |
ctattcaagggatgagggacaaaggttttggttttttcatgttgtcaactagttgaacaattaatcagaatagatggtgattgtctggttgagttgatca |
143 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||| | || ||||||| |
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| T |
2234666 |
ctattcaagggatgggggacagaggttttggttttttcatgttgtcaaagagttgaac----aatcaaaatagatggcgattgtctgatcgaattgatca |
2234571 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 495693 - 495536
Alignment:
| Q |
44 |
ctattcaagggatgagggacaaaggttttggttttttcatgttgtcaactagttgaacaattaatcagaatagatggtgattgtctggttgagttgatca |
143 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||| ||| | || ||||||| |
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| T |
495693 |
ctattcaagggatgggggacagaggttttggttttttcatgttgtcaaagagttgaacaatcaa----aatagatggcgattgcctgatcgaattgatca |
495598 |
T |
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| Q |
144 |
tgtcatgtaggaacaaagttcaagtctacggatctgttagaatgcctcagctgcatacatta |
205 |
Q |
| |
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|||||||| |||||| |||||||||||| | |||||||| ||||||||||||||||||||| |
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| T |
495597 |
ggtcatgtaagaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatta |
495536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 18193354 - 18193197
Alignment:
| Q |
44 |
ctattcaagggatgagggacaaaggttttggttttttcatgttgtcaactagttgaacaattaatcagaatagatggtgattgtctggttgagttgatca |
143 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||| ||| | || ||||||| |
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| T |
18193354 |
ctattcaagggatgggggacagaggttttggttttttcatgttgtcaaagagttgaacaatcaa----aatagatggcgattgcctgatcgaattgatca |
18193259 |
T |
|
| Q |
144 |
tgtcatgtaggaacaaagttcaagtctacggatctgttagaatgcctcagctgcatacatta |
205 |
Q |
| |
|
|||||||| |||||| |||||||||||| | |||||||| ||||||||||||||||||||| |
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| T |
18193258 |
ggtcatgtaagaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatta |
18193197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 46151550 - 46151739
Alignment:
| Q |
11 |
ggacatcaaaagcttttgccattctatctctatctattcaagggatgagggacaaaggttttggttttttcatgttgtcaactagttgaacaattaatca |
110 |
Q |
| |
|
||||| |||| || ||| || ||| ||| ||| |||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||| || |
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| T |
46151550 |
ggacaccaaaggcattttcccttccatccctagctattcaagggatgggggacaaatgttttggtttttt-atgttgtcaaagagttgaacaatcaa--- |
46151645 |
T |
|
| Q |
111 |
gaatagatggtgattgtctggttgagttgatcatgtcatgtaggaacaaagttcaagtctacggatctgttagaatgcctcagctgcatacatta |
205 |
Q |
| |
|
||||||||| ||||| ||| | || ||||||| |||||||| ||| || |||||||||||| |||||||| |||| |||||||||| ||||| |
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|
| T |
46151646 |
-aatagatggcgattgcctgatcgaattgatcaggtcatgtaagaaaaaggttcaagtctaccagtctgttaggatgcatcagctgcatgcatta |
46151739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 3171674 - 3171615
Alignment:
| Q |
44 |
ctattcaagggatgagggacaaaggttttggttttttcatgttgtcaactagttgaacaat |
104 |
Q |
| |
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|||||||||||| | |||||||| ||||||| |||||||||||||||| ||||||||||| |
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| T |
3171674 |
ctattcaagggacg-gggacaaaagttttggatttttcatgttgtcaaagagttgaacaat |
3171615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 48919815 - 48919972
Alignment:
| Q |
44 |
ctattcaagggatgagggacaaaggttttggttttttcatgttgtcaactagttgaacaattaatcagaatagatggtgattgtctggttgagttgatca |
143 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||| | || ||||||| |
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|
| T |
48919815 |
ctattcaagggatgggggacagaggttttggttttttcatgttgtcaaagagttgaacaatcaa----aatagatggtgattgcctgatcgaattgatca |
48919910 |
T |
|
| Q |
144 |
tgtcatgtaggaacaaagttcaagtctacggatctgttagaatgcctcagctgcatacatta |
205 |
Q |
| |
|
|||||||| |||||| |||||||||||| | |||||||| ||||||||||| ||||||||| |
|
|
| T |
48919911 |
ggtcatgtaagaacaaggttcaagtctaccggtctgttaggatgcctcagctacatacatta |
48919972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 21351982 - 21351936
Alignment:
| Q |
44 |
ctattcaagggatgagggacaaaggttttggttttttcatgttgtcaa |
91 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
21351982 |
ctattcaagggatg-gggacagaggttttggttttttcatgttgtcaa |
21351936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 39186831 - 39186881
Alignment:
| Q |
221 |
gttctaactcaacttataaaaatatcaaaattgctaagttgaacgtcgtga |
271 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
39186831 |
gttctaactcaatcgataaaaatatcaaaattgttaagttggacgtcgtga |
39186881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 33953245 - 33953212
Alignment:
| Q |
221 |
gttctaactcaacttataaaaatatcaaaattgc |
254 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |
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| T |
33953245 |
gttctaactcaactgataaaaatatcaaaattgc |
33953212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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